View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16601_high_14 (Length: 304)

Name: NF16601_high_14
Description: NF16601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16601_high_14
NF16601_high_14
[»] chr2 (1 HSPs)
chr2 (16-304)||(5311498-5311786)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 304
Target Start/End: Original strand, 5311498 - 5311786
Alignment:
Q  16 atcctggattcagaaatcaatataaggtatgatgcgtatttatccaacaaaaagttatcaagacagataaatcaatctgagtctgagaagagtttaaagg 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5311498 atcctgcattcagaaatcaatataaggtatgatgcgtatttatccaacaaaaagttatcaagacagataaatcaatctgagtctgagaagagtttaaagg 5311597  T
Q  116 cgataaccagagaaagacagcatgatagatgtataaactaaacttttttctctatgaatgcaggtgcatcccctaacaaaaagtagctacacatttatag 215  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  5311598 tgataaccagagaaagacagcatgatagatgtataaactaaacttttttctctatgaatgcaggtgtatcccctaacaaaaagtagttacacatttatag 5311697  T
Q  216 ctaaagaacaaatacaacaggtcaaaaagtcatgtcaagcaacatcatttcacatataattaagattaaaataaataattaacttgtaa 304  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5311698 ctaaagaacaaataaaacaggtcaaaaagtcatgtcaagcaacatcatttcacatataattaagattaaaataaataattaacttgtaa 5311786  T

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