View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16601_high_3 (Length: 365)
Name: NF16601_high_3
Description: NF16601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16601_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 149 - 353
Target Start/End: Complemental strand, 33550454 - 33550250
Alignment:
| Q |
149 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550454 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
33550355 |
T |
|
| Q |
249 |
gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatg |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33550354 |
gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtttggaaaatgatg |
33550255 |
T |
|
| Q |
349 |
atatt |
353 |
Q |
| |
|
||||| |
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|
| T |
33550254 |
atatt |
33550250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 149 - 353
Target Start/End: Complemental strand, 26230829 - 26230624
Alignment:
| Q |
149 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230829 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
26230730 |
T |
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| Q |
249 |
gtattttagtagcgcaaaatacttccctgaacattataactttaaaaag-attatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgat |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230729 |
gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagaattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgat |
26230630 |
T |
|
| Q |
348 |
gatatt |
353 |
Q |
| |
|
|||||| |
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|
| T |
26230629 |
gatatt |
26230624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 26230976 - 26230909
Alignment:
| Q |
2 |
acaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230976 |
acaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
26230909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 33550600 - 33550533
Alignment:
| Q |
2 |
acaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33550600 |
acaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
33550533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 149 - 353
Target Start/End: Original strand, 8335378 - 8335582
Alignment:
| Q |
149 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
248 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8335378 |
tgataatgtaccttgattggagtgttgaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
8335477 |
T |
|
| Q |
249 |
gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatg |
348 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8335478 |
gtattttagtagcgcaaaaaacttccctgaacattataactttaaaaagattatttccatagtatccaaaaataatgtcaacattgtctggaaaatgatg |
8335577 |
T |
|
| Q |
349 |
atatt |
353 |
Q |
| |
|
||||| |
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|
| T |
8335578 |
atatt |
8335582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 8335235 - 8335298
Alignment:
| Q |
6 |
cacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
8335235 |
cacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgatcgggcaacatct |
8335298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 4684810 - 4684949
Alignment:
| Q |
149 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684810 |
tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag |
4684909 |
T |
|
| Q |
249 |
gtattttagtagcgcaaaatacttccctgaacattataac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
4684910 |
gtattttagtagcgcaaaatacttccctgaacattataac |
4684949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 4684663 - 4684730
Alignment:
| Q |
2 |
acaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4684663 |
acaacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct |
4684730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 353
Target Start/End: Complemental strand, 26632645 - 26632567
Alignment:
| Q |
275 |
ctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatgatatt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| |||||||||||| || | |||||||||||||| |
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| T |
26632645 |
ctgaacattataactttaaaaagattatttttatattatccaaaaagaatgtcaacattatcggaaaaatgatgatatt |
26632567 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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