View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16601_high_5 (Length: 357)
Name: NF16601_high_5
Description: NF16601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16601_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 21218868 - 21219212
Alignment:
| Q |
13 |
aaaatatatcttcattggggtaacctgccttgcttcgcaacagtcaggaattatgagctctattcccttaggatccgctgagcacagaagacaaaaaaca |
112 |
Q |
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| T |
21218868 |
aaaatatatcttcattggggtaacctgccttgcttcgcaacagtcaggaattatgagctctattcccttaggatccgctgagcacagaagacaaaaaaca |
21218967 |
T |
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| Q |
113 |
aataattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacaaaacaataaataaaatgatccattaaccagg |
212 |
Q |
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| T |
21218968 |
aataattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacagaacaataaataaaatgatccattaaccagg |
21219067 |
T |
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| Q |
213 |
atatatcagcacagctgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatcagtgaatcaagtactatagttg |
312 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219068 |
atatatcagcacagttgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatcagtgaatcaagtactatagttg |
21219167 |
T |
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| Q |
313 |
cacaaaacaactatttagtaaaatataatcaagattccaggagta |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219168 |
cacaaaacaactatttagtaaaatataatcaagattccaggagta |
21219212 |
T |
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