View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16601_low_1 (Length: 501)
Name: NF16601_low_1
Description: NF16601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16601_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 14 - 486
Target Start/End: Original strand, 42670547 - 42671018
Alignment:
| Q |
14 |
aaatgaaaaaattgcttgtggggaagaattggcagagatgtttggtaacatttcttattggcacataccaatactagctatgacagctgatgtaactcaa |
113 |
Q |
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| T |
42670547 |
aaatgaaaaaattgcttgtggggaagaattggcagagatgtttggtaacatttcttattggcacataccaatactagctatgacagctgatgtaactcaa |
42670646 |
T |
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| Q |
114 |
gcatcaaatgaagaatgcaaaaaatgtgggatggatgactttgtgtcaaagccatttgaagaagagcaactctatacggcagtggcacgtgtcttcagtt |
213 |
Q |
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| T |
42670647 |
gcatcaaatgaagaatgcaaaaaatgtgggatggatgactttgtgtcaaagccatttgaagaagagcaactctatacggcagtggcatgtgtcttcagtt |
42670746 |
T |
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| Q |
214 |
ttggttcatagtaaggaagtagcattgcttattgacatgctgcattactcgctactacagctgatgcaactcggccttcgaaagcagaattctgcataat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670747 |
ttggttcatagtaaggaagtagcattgcttattgacatgctgcattactcgctactacagctgatgcaactcggccttcgaaagcagaattctgcataat |
42670846 |
T |
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| Q |
314 |
ggatctcagctatggctgtgtagatatagtaagtgtcgtgtttcattatccttggattttcatattacaagtgcatttagtagaaaattttcaatgatta |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42670847 |
ggatctcagctatggctgtgtagatatagtaagtgtcgtgtttcattatccttggattttcatattacaagtgcatttagtagaaaattttcaatgatta |
42670946 |
T |
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| Q |
414 |
caacatacatgtgtttcatttctaaattttttcactactttaatacgtttcattttagctgcagcttgttttt |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
42670947 |
gaacatacatgtgtttcatttctaaattttttcactactttaatatgtttca-tttagctgcagcttgttttt |
42671018 |
T |
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