View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16601_low_2 (Length: 326)
Name: NF16601_low_2
Description: NF16601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16601_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 17594683 - 17594381
Alignment:
| Q |
17 |
agtggaatctcatcattcagctttgtatcctttgcacacaaaaatggaacaaaacattattcaaagatgggaagccaaagtttcaaccaaactcaaaaac |
116 |
Q |
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| T |
17594683 |
agtggaatctcatcattcagctttgtatcctttgcacacaaaaatggaacaaaacattattcaaagatgggaagccaaagtttcaaccaaactgaaaaac |
17594584 |
T |
|
| Q |
117 |
accacaaaacaacaagcatggccacttatcaaagactttttcaatctccacaaacgcttccctaacctcgccacatgttacggtatccacggatccaacg |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17594583 |
accacaaaacaacaagcatggccactcatcaaagactttttcaatctccacaaacgcttccctaacctcgccacatgttacggtatccacggatccaacg |
17594484 |
T |
|
| Q |
217 |
gtgaggtgggatgcatacgttactgtgctggatcctccctcccatcagacggatcacaagaagtgagctggtcaaaggagagattggtagccgttgatga |
316 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17594483 |
gtgaggtgggatgcatacgttactgtgctggattctccctcccatcagacggatcacaagaagtgagctggtcaaaggagagattggtagccgttgatga |
17594384 |
T |
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| Q |
317 |
tgt |
319 |
Q |
| |
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||| |
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| T |
17594383 |
tgt |
17594381 |
T |
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