View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16601_low_3 (Length: 238)
Name: NF16601_low_3
Description: NF16601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16601_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 4559365 - 4559171
Alignment:
| Q |
34 |
gactaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttaaaat |
133 |
Q |
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| T |
4559365 |
gactaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttaaaat |
4559266 |
T |
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| Q |
134 |
tagtttgatatttttcaagatagttataagttagttattattagatgcaagttggttacattagggatcttagataagcctagtcagaccctatg |
228 |
Q |
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| T |
4559265 |
tagtttgatatttttcaagatagttataagttagttatgattagatgcaagttggttacattagggatcttagataagcctagtcagaccctatg |
4559171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 4573267 - 4573130
Alignment:
| Q |
39 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttaaaattagtt |
138 |
Q |
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| T |
4573267 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcatatttgttgaaattagtt |
4573168 |
T |
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| Q |
139 |
tgatatttttcaagatagttataagttagttattatta |
176 |
Q |
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| T |
4573167 |
tagtattgtttaagatagttataagttagttatgatta |
4573130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 4566253 - 4566133
Alignment:
| Q |
39 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagatttgttaaaattagtt |
138 |
Q |
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| T |
4566253 |
aagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatgtagtttcagatttgttaaaattagtt |
4566154 |
T |
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| Q |
139 |
tgatatttttcaagatagtta |
159 |
Q |
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| T |
4566153 |
taatattttggaagatagtta |
4566133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 4615237 - 4615168
Alignment:
| Q |
55 |
tgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
125 |
Q |
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| T |
4615237 |
tgtttgatgatatcttcc-actgaatggttggaatgccatgcatgtattttttagatatagtttgagattt |
4615168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 4591438 - 4591385
Alignment:
| Q |
112 |
atagtttcagatttgttaaaattagtttgatatttttcaagatagttataagtt |
165 |
Q |
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| T |
4591438 |
atagtttgatatttgttagaattagtttcatattttttaggatagttataagtt |
4591385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 16684943 - 16685033
Alignment:
| Q |
35 |
actaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
125 |
Q |
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| T |
16684943 |
actaaagcatatgaagattttgtttgataatatctttctactgaatggttgcaattccatgcaagtatgtgttagatatagtttcagattt |
16685033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 37214216 - 37214283
Alignment:
| Q |
104 |
tgttagatatagtttcagatttgttaaaattagtttgatatttttcaagatagttataagttagttat |
171 |
Q |
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| T |
37214216 |
tgttagagatagtttgatatttgttagaattagttggatattgtttaaggtagttaaaagttagttat |
37214283 |
T |
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