View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16602_high_1 (Length: 405)
Name: NF16602_high_1
Description: NF16602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16602_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 9 - 390
Target Start/End: Complemental strand, 4770611 - 4770230
Alignment:
| Q |
9 |
agcaaaggttattcaatcccaacagatgacgatgaagtgaaagttgaaccatatgaaaatggtggatcatttctttacaaagcatctatcagctgcgatt |
108 |
Q |
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| T |
4770611 |
agcaaaggttattcaattccaacagacgatgatgaagtgaaagttgaaccatatgaaaatggtggatcatttctttacaaagcatctatcagctgcgatt |
4770512 |
T |
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| Q |
109 |
atcgaccagaacttctatctgatctaagacaaactcttgataaacttcaactacaattggtaagggaagaaatatcaactttgggagacagggttaagaa |
208 |
Q |
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| T |
4770511 |
atcgaccagaacttctatctgatctaagacaaactcttgataaacttcaactacaattggtaagggaagaaatatcaactttgggagacagggttaagaa |
4770412 |
T |
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| Q |
209 |
tgaatttgtctacacatgttgtaaagtagacatttatgatattgaactatgtccacttattgcaagtaatgttcatcaggcactgagttctgtactggaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4770411 |
tgaatttgtctacacatgttgtaaagtagacatttatgatattgaactatgtccacttattgcaagtaatgttcatcaggcactgagttctgtactggaa |
4770312 |
T |
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| Q |
309 |
agggcttctacctcgatggactactcgttaagaacaccacgtccttgcaaacagatgcagcagacatctactatgtcatgca |
390 |
Q |
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| T |
4770311 |
agggcttctacctcgatggactactcgttaagaacaccacgtccttgcaaacagatgcagcagacatctactatgtcatgca |
4770230 |
T |
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