View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16602_high_2 (Length: 261)
Name: NF16602_high_2
Description: NF16602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16602_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 2152778 - 2152554
Alignment:
| Q |
19 |
gactagtatggtgatgactgaccactacctataacgttacacttacagttggacagctagagtgtgatccgtgtgacccaatagcggtgacctagcaggt |
118 |
Q |
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| T |
2152778 |
gactagtatggtgatgactgaccactacctataacgtcacgcttagaattagacagctagagtctgatcgatgtggcccaatagcggtgacctagcaggt |
2152679 |
T |
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| Q |
119 |
ggcctaacaaaccttggatagactagtatatcatcttaggatttgggttaatcctaattcaagtcctacaaaatcgacttagtaaggtggagactgtcca |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| |
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| T |
2152678 |
ggcctaacaaaccttggatagactagtataccatcttagaatttgggttaatcctaattcaagtcctacgaaatcgactt-ttaaggtgaagactgtcca |
2152580 |
T |
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| Q |
219 |
ccaattattaacatgcacgttttcaa |
244 |
Q |
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||| |||||||||| ||||||||||| |
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| T |
2152579 |
ccacttattaacatacacgttttcaa |
2152554 |
T |
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