View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16602_high_4 (Length: 220)
Name: NF16602_high_4
Description: NF16602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16602_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 9148264 - 9148479
Alignment:
| Q |
1 |
ccctcaaggaagcttgcattttccacagacatgctaggaatgttggtt-ttggttaaaatctatttggaataatggaactcctccttaaaaatccttgcg |
99 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9148264 |
ccctcaaggaagcttgcattttccacagacatgttaggaatgttgtttcttggttaaaatctatttggaataatggaactcctccttaaaaatccttgct |
9148363 |
T |
|
| Q |
100 |
aattttgaggctcattcataataaaattccaattgatggc-atctcatattaaaaggttgttaaactcccacaatgt-ttcgttgtacaataaggaatct |
197 |
Q |
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||||| |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9148364 |
aatttggaggctcaatcataataaaattccaatagatggcaatctcatattaaaaggttgttaaactcccacaatgtgttcgttgtacaataaggaatct |
9148463 |
T |
|
| Q |
198 |
gaatcttcttctcact |
213 |
Q |
| |
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|||||||||||||||| |
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| T |
9148464 |
gaatcttcttctcact |
9148479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 9178808 - 9178593
Alignment:
| Q |
1 |
ccctcaaggaagcttgcattttccacagacatgctaggaatgttggtt-ttggttaaaatctatttggaataatggaactcctccttaaaaatccttgcg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9178808 |
ccctcaaggaagcttgcattttccacagacatgttaggaatgttgtttcttggttaaaatctatttggaataatggaactcctccttaaaaatccttgct |
9178709 |
T |
|
| Q |
100 |
aattttgaggctcattcataataaaattccaattgatggc-atctcatattaaaaggttgttaaactcccacaatgt-ttcgttgtacaataaggaatct |
197 |
Q |
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|
||||| |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9178708 |
aatttggaggctcaatcataataaaattccaatagatggcaatctcatattaaaaggttgttaaactcccacaatgtgttcgttgtacaataaggaatct |
9178609 |
T |
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| Q |
198 |
gaatcttcttctcact |
213 |
Q |
| |
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|||||||||||||||| |
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| T |
9178608 |
gaatcttcttctcact |
9178593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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