View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16602_low_2 (Length: 296)

Name: NF16602_low_2
Description: NF16602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16602_low_2
NF16602_low_2
[»] chr6 (4 HSPs)
chr6 (12-283)||(32297813-32298084)
chr6 (186-226)||(6751897-6751937)
chr6 (182-226)||(10031570-10031614)
chr6 (183-223)||(29711263-29711303)
[»] scaffold0314 (1 HSPs)
scaffold0314 (183-217)||(8949-8983)
[»] chr1 (2 HSPs)
chr1 (175-225)||(40317832-40317882)
chr1 (190-226)||(18946049-18946085)
[»] chr5 (1 HSPs)
chr5 (177-226)||(30080516-30080565)
[»] chr2 (1 HSPs)
chr2 (188-217)||(2356382-2356411)
[»] chr8 (1 HSPs)
chr8 (175-215)||(24295163-24295203)
[»] chr7 (2 HSPs)
chr7 (194-226)||(18678160-18678192)
chr7 (194-226)||(35238199-35238231)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 32297813 - 32298084
Alignment:
Q  12 aagaaaataaatgtggagatagcaatgtatccatgtccattagatcacattgtccacactgtttcagtggttatatatgtcgatggtgccggccttatag 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32297813 aagaaaataaatgtggagatagcaatgtatccatgtccattagatcacattgtccacactgtttcagtggttatatatgttgatggtgccggccttatag 32297912  T
Q  112 aagaatcataatctataatgtataaaccatgaacgcagacatgaacaccggacactgacatttacatgtcgacatcgatcaaattttgagaaaatgacat 211  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||    
T  32297913 aagaatcataatctataatgtataaaccacgaacacagacatgaacaccggacactgacatttacacgtcgacaccgatcaaattttgagaaaatgatat 32298012  T
Q  212 aattcattataatcagaaaagtcagtgtcggtgtacacgacacatatcagagccgagacacgcattcaataa 283  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||    
T  32298013 aattcattataattagaaatgtcagtgtcagtgtacacgacacatatcagacacgagacacgcattcaataa 32298084  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 6751937 - 6751897
Alignment:
Q  186 tcgatcaaattttgagaaaatgacataattcattataatca 226  Q
    ||||| |||||||||||||||||||||||||| | ||||||    
T  6751937 tcgataaaattttgagaaaatgacataattcaatgtaatca 6751897  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 10031570 - 10031614
Alignment:
Q  182 gacatcgatcaaattttgagaaaatgacataattcattataatca 226  Q
    |||| |||| |||||||||||||||||||||||||| | ||||||    
T  10031570 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 10031614  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 29711263 - 29711303
Alignment:
Q  183 acatcgatcaaattttgagaaaatgacataattcattataa 223  Q
    |||||||| | | ||||||||||||||||||||||||||||    
T  29711263 acatcgataataatttgagaaaatgacataattcattataa 29711303  T

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Target: scaffold0314 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 8949 - 8983
Alignment:
Q  183 acatcgatcaaattttgagaaaatgacataattca 217  Q
    |||||||| ||||||||||||||||||||||||||    
T  8949 acatcgataaaattttgagaaaatgacataattca 8983  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 40317882 - 40317832
Alignment:
Q  175 acatgtcgacatcgatcaaattttgagaaaatgacataattcattataatc 225  Q
    |||||| ||||||| | |||||||||||||||| ||||||||| |||||||    
T  40317882 acatgtggacatcggtaaaattttgagaaaatggcataattcaatataatc 40317832  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 18946085 - 18946049
Alignment:
Q  190 tcaaattttgagaaaatgacataattcattataatca 226  Q
    |||||||||||||||||||||||||||| | ||||||    
T  18946085 tcaaattttgagaaaatgacataattcaatgtaatca 18946049  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 30080565 - 30080516
Alignment:
Q  177 atgtcgacatcgatcaaattttgagaaaatgacataattcattataatca 226  Q
    |||||||||  ||| |||||||||||||||||||||||||| | ||||||    
T  30080565 atgtcgacactgataaaattttgagaaaatgacataattcaatgtaatca 30080516  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 2356411 - 2356382
Alignment:
Q  188 gatcaaattttgagaaaatgacataattca 217  Q
    ||||||||||||||||||||||||||||||    
T  2356411 gatcaaattttgagaaaatgacataattca 2356382  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 24295203 - 24295163
Alignment:
Q  175 acatgtcgacatcgatcaaattttgagaaaatgacataatt 215  Q
    |||||||||||||||| ||||| ||||||||||||| ||||    
T  24295203 acatgtcgacatcgataaaattgtgagaaaatgacacaatt 24295163  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 18678160 - 18678192
Alignment:
Q  194 attttgagaaaatgacataattcattataatca 226  Q
    |||||||||||||||||||||||| ||||||||    
T  18678160 attttgagaaaatgacataattcaatataatca 18678192  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 35238231 - 35238199
Alignment:
Q  194 attttgagaaaatgacataattcattataatca 226  Q
    |||||||||||||||||||||||| ||||||||    
T  35238231 attttgagaaaatgacataattcaatataatca 35238199  T

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