View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16602_low_5 (Length: 241)

Name: NF16602_low_5
Description: NF16602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16602_low_5
NF16602_low_5
[»] chr1 (2 HSPs)
chr1 (1-165)||(7257902-7258062)
chr1 (171-233)||(7257800-7257862)


Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 7258062 - 7257902
Alignment:
Q  1 ctcagactttggaaggccaaagcatcagaacaacttggagtagtaagttgatttcattgttgattcattcatcctctttttttacacacacacnnnnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||            
T  7258062 ctcagactttggaaggccaaagcatcagaacaacttggagtagtaagttgatttcatt-----------catcctctttttttacacacacaaaaaaaaa 7257974  T
Q  101 nnnnn-------ctgtcatctattaattgtggttcatgttgtactaagattgaaattctattataactgtga 165  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7257973 aaaaaaaaaaaactgtcatctattaattgtggttcatgttgtactaagattgaaattctattataactgtga 7257902  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 7257862 - 7257800
Alignment:
Q  171 ttaataatttctcttctgagaggcccttcaattcattccgagattcacctgtttatgatgatg 233  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7257862 ttaataatttctcttctgagaggcccttcagttcattccgagattcacctgtttatgatgatg 7257800  T

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