View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16603_low_1 (Length: 329)
Name: NF16603_low_1
Description: NF16603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16603_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 314
Target Start/End: Complemental strand, 8974960 - 8974660
Alignment:
| Q |
14 |
gaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgn |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8974960 |
gaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgt |
8974861 |
T |
|
| Q |
114 |
nnnnnngtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
8974860 |
ttttttgtgtgaagttgagtgcacaaagaagattgacataatcttgtacaccaacatcataaacaagtccagggttaagtgctttgttggggttgatatg |
8974761 |
T |
|
| Q |
214 |
accagctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcatt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8974760 |
accagctccttgtgcaaaaggtgttgctacgttgttaccttttccaatgtcttttatgagttccttagtattatcaaatatgtctgatgttgtcatcatt |
8974661 |
T |
|
| Q |
314 |
g |
314 |
Q |
| |
|
| |
|
|
| T |
8974660 |
g |
8974660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 8963569 - 8963264
Alignment:
| Q |
9 |
gagatgaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagt |
108 |
Q |
| |
|
|||| |||||| |||| ||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||||||| | || |||||||| ||| ||| |
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|
| T |
8963569 |
gagaagaatttccagcgttgaaaaaagcaataaaagaagggtagttgagatgcaaggaaggattagaacaatcattggatgatgatcttgttatggcagt |
8963470 |
T |
|
| Q |
109 |
gatgnnnnnnngtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttg |
208 |
Q |
| |
|
||| |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||| | || |||||| |
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|
| T |
8963469 |
aatgtgtttttgtgtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttg |
8963370 |
T |
|
| Q |
209 |
atatgaccagctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtca |
308 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
8963369 |
atatgaccagctcccaatgcaaaaggtgttgctgctatgttatcttttccaatgtctttgataagttccttagtgttatcaaatatgtctgatgttgtca |
8963270 |
T |
|
| Q |
309 |
tcattg |
314 |
Q |
| |
|
|||||| |
|
|
| T |
8963269 |
tcattg |
8963264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 8945520 - 8945820
Alignment:
| Q |
14 |
gaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgn |
113 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||| |||||||| |
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|
| T |
8945520 |
gaatttccagcattgaaaaaagctataaaagaagggtaattaagatccaaggaaggtttagaacaatcattgaaagaggatcttgtaatcgtagtgatgt |
8945619 |
T |
|
| Q |
114 |
nnnnnngtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatg |
213 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| | | || |
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|
| T |
8945620 |
ttttttgtgtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggatcaacata |
8945719 |
T |
|
| Q |
214 |
accagctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcatt |
313 |
Q |
| |
|
||||||||| ||||| ||| ||||| || | || |||||| |||||||||| ||| ||||||||||||||||| |||||| |||||||||||| ||| |
|
|
| T |
8945720 |
accagctcccaatgcaagaggagttgcaacttcattacctttttcaatgtctttgatatgttccttagtattatcatatatgtttgatgttgtcataatt |
8945819 |
T |
|
| Q |
314 |
g |
314 |
Q |
| |
|
| |
|
|
| T |
8945820 |
g |
8945820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 28 - 314
Target Start/End: Complemental strand, 8958536 - 8958250
Alignment:
| Q |
28 |
gaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgnnnnnnngtgtgaag |
127 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||| ||||||| ||| |||||||| | |||||||||||| ||| ||||||| ||| | || |
|
|
| T |
8958536 |
gaagaatgcaataaaagaagggtagttaagatccaaagaaggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgtttttttgtgagtag |
8958437 |
T |
|
| Q |
128 |
ttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtg |
227 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| || || || | |||||||||||| || |
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|
| T |
8958436 |
ctaagtgcacaaagaagattaacataatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatg |
8958337 |
T |
|
| Q |
228 |
caaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattg |
314 |
Q |
| |
|
||||||| |||||| | || || | |||||||||||||| ||| |||||||||||||||||| |||||| || |||||||| |||| |
|
|
| T |
8958336 |
caaaaggagttgctgctttattatcatttccaatgtctttaatatgttccttagtattatcaattatgtccgacgttgtcataattg |
8958250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 9947991 - 9948291
Alignment:
| Q |
14 |
gaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgn |
113 |
Q |
| |
|
|||||| || |||||||||||||||||||| |||||| || | |||||| ||||||||||| |||||||| | |||||||||||| ||||||| |
|
|
| T |
9947991 |
gaatttccaccattgaagaaagcaataaaaaaagggtggttaatatccaatgaaggtttagagcaatcattgaatgtggatcttgtaatggtagtgatat |
9948090 |
T |
|
| Q |
114 |
nnnnnngtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatg |
213 |
Q |
| |
|
|||||||||| ||| || | ||||||||||||||||||||| ||||||| ||||||| ||| || |||| ||| ||||| | | | | || |
|
|
| T |
9948091 |
gtttctgtgtgaagttaagtccatagagaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagcgctctagtagtatcaacata |
9948190 |
T |
|
| Q |
214 |
accagctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcatt |
313 |
Q |
| |
|
|| ||||||| ||||| ||| ||||| || ||||| |||| ||| |||||||| ||| ||||||||| ||||||||||||| |||||||||||| ||| |
|
|
| T |
9948191 |
actagctcctaatgcaagaggagttgcaactttgttaccttctccgatgtctttgatatgttccttagcattatcaaatatggttgatgttgtcataatt |
9948290 |
T |
|
| Q |
314 |
g |
314 |
Q |
| |
|
| |
|
|
| T |
9948291 |
g |
9948291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 9949362 - 9949422
Alignment:
| Q |
120 |
gtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaag |
180 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
9949362 |
gtgtgaagttaagtgcacaaagaagattaagataatgtcttacaccaacatcataaacaag |
9949422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 34962303 - 34962600
Alignment:
| Q |
14 |
gaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgn |
113 |
Q |
| |
|
|||||| || ||||||| |||||||||||||||||||| || |||||||| |||||||||||||||||||| | ||| |||||||| ||| |||||||| |
|
|
| T |
34962303 |
gaatttccatcattgaaaaaagcaataaaagaagggtagttaagatccaaggaaggtttagaacaatcattggaagaggatcttgtgatggtagtgatgt |
34962402 |
T |
|
| Q |
114 |
nnnnnngtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatg |
213 |
Q |
| |
|
||| | | || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| || || || | ||| |
|
|
| T |
34962403 |
ttttttgtgagtatttaagtgcacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaacatg |
34962502 |
T |
|
| Q |
214 |
accagctccttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcatt |
313 |
Q |
| |
|
||||||||| |||||||||||||||| | |||| || ||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
34962503 |
accagctcccaatgcaaaaggtgttgctgctttgt---ctgttccaatgtctttgatttgttccttagaattatcaaatatgtctgatgttgtcattatt |
34962599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 21686691 - 21686983
Alignment:
| Q |
22 |
agcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgnnnnnnngt |
121 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||||| || ||||||||||| |||||||| |||||||||||||||| | ||||| || |
|
|
| T |
21686691 |
agcattggagaaagcaataaaagaagggtagttaagatctaaggaaggtttagagcaatcattgaaagaagatcttgtaatggcactgatgtttttttgt |
21686790 |
T |
|
| Q |
122 |
gtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctc |
221 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||| | ||||||||| || ||||| ||||||||||||| |
|
|
| T |
21686791 |
gtgaagttaagtgcacaaagaagattaatataatcttgtacaccgatatcataaacaagaccaggatcaagtgctctattagggttaatatgaccagctc |
21686890 |
T |
|
| Q |
222 |
cttgtgcaaaaggtgttgctacgttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcatcattg |
314 |
Q |
| |
|
| ||||||||| |||||| | |||| || |||||||||||||| ||| ||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
21686891 |
ccaatgcaaaaggagttgctgctctgttaccatttccaatgtctttgatatgttccttagtattgtctaatatgtctgatgttgtcataattg |
21686983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 49008601 - 49008501
Alignment:
| Q |
122 |
gtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctc |
221 |
Q |
| |
|
|||||||| | |||||| |||||||| |||||||||||| || ||||||||||||||||||| | ||||||||| ||||| |||||||| || |||| |
|
|
| T |
49008601 |
gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctc |
49008502 |
T |
|
| Q |
222 |
c |
222 |
Q |
| |
|
| |
|
|
| T |
49008501 |
c |
49008501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 19375625 - 19375689
Alignment:
| Q |
245 |
ttgttcccttttccaatgtcttttataagttccttagtattatcaaatatgtctgatgttgtcat |
309 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| ||||||| || | |||||||||||||||||| |
|
|
| T |
19375625 |
ttgttaccttttccaatgtctttcataagttttgtagtattgtctattatgtctgatgttgtcat |
19375689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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