View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16603_low_2 (Length: 269)

Name: NF16603_low_2
Description: NF16603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16603_low_2
NF16603_low_2
[»] chr1 (8 HSPs)
chr1 (18-259)||(15002300-15002541)
chr1 (18-259)||(15037213-15037453)
chr1 (18-259)||(15011193-15011434)
chr1 (18-255)||(15017312-15017549)
chr1 (18-259)||(15032651-15032886)
chr1 (18-259)||(14522302-14522543)
chr1 (18-259)||(14532423-14532664)
chr1 (169-259)||(15040937-15041029)
[»] scaffold0400 (2 HSPs)
scaffold0400 (18-259)||(6684-6922)
scaffold0400 (18-259)||(12972-13222)
[»] scaffold0365 (2 HSPs)
scaffold0365 (18-259)||(7328-7566)
scaffold0365 (18-259)||(13615-13865)
[»] chr8 (2 HSPs)
chr8 (18-113)||(17027228-17027323)
chr8 (18-113)||(17557720-17557815)
[»] chr7 (1 HSPs)
chr7 (212-258)||(16025269-16025315)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 15002541 - 15002300
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccc 117  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15002541 catcaaagctccatatttcaaatagattttcaattttcaattcttgtgcaggcttgtattcttttgtgcttgaagttcgacaaaaaaggtatgagatccc 15002442  T
Q  118 ataaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgtt 217  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15002441 ataaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagtattatgactatgaaaggtgccacccgatgtt 15002342  T
Q  218 gagcaaggctctaggccagaaacattaccacacaagcctttg 259  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15002341 gagcaaggctctaggccagaaacattaccacacaagcctttg 15002300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 15037453 - 15037213
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| | |||||||||||||    
T  15037453 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgctggcttgtgttcttttgtgcttgaagttcgacaaaga-ggtatgagatccc 15037355  T
Q  118 ataaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgtt 217  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15037354 ataaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttagtattatgactatgaaaggtgccacccgatgtt 15037255  T
Q  218 gagcaaggctctaggccagaaacattaccacacaagcctttg 259  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  15037254 gagcaaggctctaggccagagacattaccacataagcctttg 15037213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 15011434 - 15011193
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  15011434 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtacaggcttgtattcttttgtgcttgaagttcgacacaaaaggtatgagatccc 15011335  T
Q  118 ataaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgtt 217  Q
    ||||||||| |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||  ||||||  ||||||  ||||||| ||||||    
T  15011334 ataaacaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagtcttatgataatgaaatttgccaccagatgtt 15011235  T
Q  218 gagcaaggctctaggccagaaacattaccacacaagcctttg 259  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  15011234 gagcaaggctctaggccagagacattaccacataagcctttg 15011193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 15017549 - 15017312
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  15017549 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttctgtgcttgaagttcgacaaaaaaagtatgagatccc 15017450  T
Q  118 ataaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgtt 217  Q
    ||||||||| |||| ||||| |||||| || |||||||| ||||||||||||||| |||||||||| |  |||||| |||||||  ||||||| ||| ||    
T  15017449 ataaacaattaatgctaacagtagaggacctagagtgagtgatagaactagcacccaaattttgtttgtcttatgattatgaaacttgccaccagatatt 15017350  T
Q  218 gagcaaggctctaggccagaaacattaccacacaagcc 255  Q
    |||||||||||||||||||| | |||||||||||||||    
T  15017349 gagcaaggctctaggccagagatattaccacacaagcc 15017312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 15032886 - 15032651
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccc 117  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||||||||||||      
T  15032886 catcaaagctccatatttcaaacagattttcaatttgaaattcttgtgcaggcttgtattcttttgcgcttgaaattcgacacaaaaggtatgagatc-- 15032789  T
Q  118 ataaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgtt 217  Q
        ||||| |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||  |||||| |||||||  ||||||| ||||||    
T  15032788 ----acaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgttagtcttatgattatgaaatttgccaccagatgtt 15032693  T
Q  218 gagcaaggctctaggccagaaacattaccacacaagcctttg 259  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  15032692 gagcaaggctctaggccagagacattaccacataagcctttg 15032651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 14522302 - 14522543
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccc 117  Q
    |||||||||||||||||  ||||||||||||| |||||||||||| | || |||||| ||||||||||||||||||   ||||||  |||||||||||||    
T  14522302 catcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgtgcttgaagtgcaacaaaattggtatgagatccc 14522401  T
Q  118 ataaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgtt 217  Q
    ||||||||  |||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||  ||||||||||| ||| | ||||| ||||||    
T  14522402 ataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgttagttttatgactatggaagtttccacctgatgtt 14522501  T
Q  218 gagcaaggctctaggccagaaacattaccacacaagcctttg 259  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  14522502 gagcaaggctctaggccagagacattaccgcacaagcctttg 14522543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 14532423 - 14532664
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccc 117  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| |||  | |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  14532423 catcaaagctccatattgcaaatagattttcagtttgaaattcttctgcgtggttgtcttcttttgtgcttgaagtttgacaaaaaaggtatgagatccc 14532522  T
Q  118 ataaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgtt 217  Q
     ||| |||  ||||  ||||||||||  || |||||||||| || ||||||||||||||| ||| |||  ||||||||||||||| ||||||| ||||||    
T  14532523 gtaagcaaaaaatgccaacaatagagtacctagagtgaggggtaaaactagcaccaaaatattgctagtcttatgactatgaaagttgccacctgatgtt 14532622  T
Q  218 gagcaaggctctaggccagaaacattaccacacaagcctttg 259  Q
    ||||||  | |||||||||| |||||||||||||||||||||    
T  14532623 gagcaacacactaggccagagacattaccacacaagcctttg 14532664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 15041029 - 15040937
Alignment:
Q  169 caccaaaattttgttaggattatga--ctatgaaaggtgccacccgatgttgagcaaggctctaggccagaaacattaccacacaagcctttg 259  Q
    |||||||||| |||||| |||||||  ||||||||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||    
T  15041029 caccaaaattgtgttagtattatgagactatgaaagttgccaccagatgttgagcaatgctctaggccagagacattaccacacaagcctttg 15040937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 6922 - 6684
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccc 117  Q
    ||||||||||||||||| |||||||||||||| |||||||||||  ||||| ||||||||||||||||||||||||| |||| |||||| ||||||  ||    
T  6922 catcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagttcgacataaaaggcatgagaggcc 6823  T
Q  118 ataaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgtt 217  Q
    ||||| ||  |||| | ||||||||| ||| ||||||| || || ||| | ||||||||| |  ||||  ||||||||||||||| | |||||  |||||    
T  6822 ataaagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgtttagtcttatgactatgaaagttaccacctaatgtt 6723  T
Q  218 gagcaaggctctaggccagaaacattaccacacaagcctttg 259  Q
    ||||||||||||| ||||||    ||||||||||||||||||    
T  6722 gagcaaggctctaagccaga---gttaccacacaagcctttg 6684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 13222 - 12972
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccc 117  Q
    |||||||||||||| || |||| ||||||||| |||||||||||| || |||||||||||||||| | ||||||||  |  | ||||||||||||| |||    
T  13222 catcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttttcttgaagtgtggtagaaaaggtatgagaaccc 13123  T
Q  118 ataaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatg---------aaaggtgcca 208  Q
    ||||||||  |||| |||||||||||  || |||||||||| || ||||||  |||||||||||||||  |||||||||||         |||| | |||    
T  13122 ataaacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgttagtcttatgactatgaaagttatgaaagtttcca 13023  T
Q  209 cccgatgttgagcaaggctctaggccagaaacattaccacacaagcctttg 259  Q
    || |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  13022 cctgatgttgagcaaggctctagaccagagacattaccacacaagcctttg 12972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 7566 - 7328
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccc 117  Q
    ||||||||||||||||| |||||||||||||| |||||||||||  ||||| ||||||||||||||||||||||||| |||| |||||| ||||||  ||    
T  7566 catcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgtgcttgaagttcgacataaaaggcatgagaggcc 7467  T
Q  118 ataaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatgaaaggtgccacccgatgtt 217  Q
    ||||| ||  |||| | ||||||||| ||| ||||||| || || ||| | ||||||||| |  ||||  ||||||||||||||| | |||||  |||||    
T  7466 ataaagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgtttagtcttatgactatgaaagttaccacctaatgtt 7367  T
Q  218 gagcaaggctctaggccagaaacattaccacacaagcctttg 259  Q
    ||||||||||||| ||||||    ||||||||||||||||||    
T  7366 gagcaaggctctaagccaga---gttaccacacaagcctttg 7328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 13865 - 13615
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgagatccc 117  Q
    |||||||||||||| || |||| ||||||||| |||||||||||| || |||||||||||||||| | ||||||||  |  | ||||||||||||| |||    
T  13865 catcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttttcttgaagtgtggtagaaaaggtatgagaaccc 13766  T
Q  118 ataaacaatcaatggtaacaatagagggccgagagtgagggatagaactagcaccaaaattttgttaggattatgactatg---------aaaggtgcca 208  Q
    ||||||||  |||| |||||||||||  || |||||||||| || ||||||  |||||||||||||||  |||||||||||         |||| | |||    
T  13765 ataaacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgttagtcttatgactatgaaagttatgaaagtttcca 13666  T
Q  209 cccgatgttgagcaaggctctaggccagaaacattaccacacaagcctttg 259  Q
    || |||||||||||||||||||| ||||| |||||||||||||||||||||    
T  13665 cctgatgttgagcaaggctctagaccagagacattaccacacaagcctttg 13615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 17027323 - 17027228
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgaga 113  Q
    ||||||||||||||| | |||||||||| ||| ||||||||| || ||  |||||||||||||||||  |||||||| || | |||||| ||||||    
T  17027323 catcaaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgtcattgaagttagatagaaaaggcatgaga 17027228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 17557815 - 17557720
Alignment:
Q  18 catcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttttgtgcttgaagttggacaaaaaaggtatgaga 113  Q
    ||||||||||||||| | |||||||||| ||| ||||||||| || ||  |||||||||||||||||  |||||||| || | |||||| ||||||    
T  17557815 catcaaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgtcattgaagttagatagaaaaggcatgaga 17557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 16025315 - 16025269
Alignment:
Q  212 gatgttgagcaaggctctaggccagaaacattaccacacaagccttt 258  Q
    ||||||| ||| ||||||| |||||| ||||||||||||||||||||    
T  16025315 gatgttgggcagggctctaagccagagacattaccacacaagccttt 16025269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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