View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_high_14 (Length: 344)
Name: NF16604_high_14
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 22704177 - 22704511
Alignment:
| Q |
1 |
gtcaatcttatccttcttctcaggagcataacaaaaccattttcattatcaaaaacagaagcatcttcaagttttaatgatatgtgtatgttgatatcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22704177 |
gtcaatcttatccttcttctcaggagcataacaaaaccattttcattatcaaaaacagaagcatcttcaagttttaatgatatgtgtatgttgatatcct |
22704276 |
T |
|
| Q |
101 |
ttagaaaactagcaagagaacgcagcaggaattggttacctcagttagatatccccgttttggaattggttaccgatgatgtgaaccctcttgaagtgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22704277 |
ttagaaaactagcaagagaacgcagcaggaattggttacctcagttagatatccccgttttggaattggttaccgatgatgtgaaccctcttgaagtgga |
22704376 |
T |
|
| Q |
201 |
gagaacgcagcaggaatctcgatacgacagtgttccaatgcttcatggaattatgtagagcacgttgacgtgtatgagaattttgaaggagctaccttgg |
300 |
Q |
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| T |
22704377 |
gagaacgcagcaggaatctcgatacgacagtgttccaatgcttcatggaattatgtagagcacgttgacgtgtatgagaattttgaaggagctaccttgg |
22704476 |
T |
|
| Q |
301 |
atttggttagggaggtcaacaattcacaggttctg |
335 |
Q |
| |
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| T |
22704477 |
atttggttagggaggtcaacaattcactggttctg |
22704511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 20737341 - 20737276
Alignment:
| Q |
251 |
ttatgtagagcacgttgacgtgtatgagaattttgaaggagctaccttggatttggttagggaggt |
316 |
Q |
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|||||||||||| ||||||||| ||||||||||||| || ||||||||||||| | |||||||||| |
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| T |
20737341 |
ttatgtagagcatgttgacgtgcatgagaattttgatggcgctaccttggattcgattagggaggt |
20737276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 33957273 - 33957208
Alignment:
| Q |
251 |
ttatgtagagcacgttgacgtgtatgagaattttgaaggagctaccttggatttggttagggaggt |
316 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||||| |
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| T |
33957273 |
ttatgtagagcacgttgacgtgcatgagaattttgatggtgctaccttggattcggttagggaggt |
33957208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 33957369 - 33957324
Alignment:
| Q |
174 |
cgatgatgtgaaccctcttgaagtggagagaacgcagcaggaatct |
219 |
Q |
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|||||| ||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
33957369 |
cgatgacgtggaccctcttgaagtagagagaacgcatcaggaatct |
33957324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 2040959 - 2040894
Alignment:
| Q |
251 |
ttatgtagagcacgttgacgtgtatgagaattttgaaggagctaccttggatttggttagggaggt |
316 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| || ||||||||||||| |||||||||||| |
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| T |
2040959 |
ttatgtagagcacgtagacgtgcatgagaattttgatggtgctaccttggattcggttagggaggt |
2040894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 32238575 - 32238510
Alignment:
| Q |
251 |
ttatgtagagcacgttgacgtgtatgagaattttgaaggagctaccttggatttggttagggaggt |
316 |
Q |
| |
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|||||||||| | ||||||||| ||||||||||||| || ||||||||||||| |||||||||||| |
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| T |
32238575 |
ttatgtagagaatgttgacgtgcatgagaattttgatggcgctaccttggattcggttagggaggt |
32238510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 32238741 - 32238677
Alignment:
| Q |
252 |
tatgtagagcacgttgacgtgtatgagaattttgaaggagctaccttggatttggttagggaggt |
316 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||| |
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| T |
32238741 |
tatgtagagcatgttgacgtgcatgagaattttgatggcattaccttggattcagttagggaggt |
32238677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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