View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_high_17 (Length: 323)
Name: NF16604_high_17
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 35263127 - 35263426
Alignment:
| Q |
1 |
aaaagtggaatttttaagaggaaatacgagaaggtagagaatgagaatggtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtg |
100 |
Q |
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| T |
35263127 |
aaaagtggaatttttaagaggaaatacgagaaggtagagaatgagaatgttccatcttccacaaatattgatgagttggagcatgcagatcatgctagtg |
35263226 |
T |
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| Q |
101 |
tttcctcctgtaccattgagaagaagggtagttcttcttctaaactgaatggagtatcagagacactgaaaccaatgagtgtggatgttggagtgaatgc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35263227 |
tttcctcctgtatcattgagaagaagggtagttcttcttctaaactgaatggagtatcagagacactgaaaccaatgagtgtggatgttggagtgaatgc |
35263326 |
T |
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| Q |
201 |
caagtcaaaagccaaatccaaagaaaatgttggtgattctgatcgaggaaaagatcaatttgttaaaggcttagatgttggaggagtttcttcagttcat |
300 |
Q |
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| T |
35263327 |
caagtcaaaagccaaatccaaagaaaatgttggtgattctgatcgaggaaaagatcaatttgttaaaggcttagatgttggaggagtttcttcagttcat |
35263426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 42 - 182
Target Start/End: Complemental strand, 16968600 - 16968460
Alignment:
| Q |
42 |
tgagaatggtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttcttct |
141 |
Q |
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| T |
16968600 |
tgagaatagtccatcttccacaaatattgatgagttggagcatgaagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttcttct |
16968501 |
T |
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| Q |
142 |
aaactgaatggagtatcagagacactgaaaccaatgagtgt |
182 |
Q |
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| T |
16968500 |
aagctgaatggagtatcagagacactgaaaccaaagagtgt |
16968460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 16992287 - 16992103
Alignment:
| Q |
1 |
aaaagtggaatttttaagaggaaatacgagaaggtagagaatgagaatggtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtg |
100 |
Q |
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|||||| |||||| | ||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || || |||||||||| |
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| T |
16992287 |
aaaagtagaatttctgagaggaaatgtgaggaggtagagaatgagagcaatccatcttccacaaatattgatgagttggagcaagccgaccatgctagtg |
16992188 |
T |
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| Q |
101 |
tttcctcctgtaccattgagaagaagggtagttcttcttctaaactgaatggagtatcagagacactgaaaccaatgagtgtgga |
185 |
Q |
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| T |
16992187 |
tttcctcctgtaccattgagaagaagggtagttcttcttctaagctgaatggagtaccagagacactgaaacgaaagagtgtgga |
16992103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 190 - 299
Target Start/End: Complemental strand, 16968416 - 16968307
Alignment:
| Q |
190 |
ggagtgaatgccaagtcaaaagccaaatccaaagaaaatgttggtgattctgatcgaggaaaagatcaatttgttaaaggcttagatgttggaggagttt |
289 |
Q |
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|||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
16968416 |
ggagtgaatgccaaatcaaaaaacaaatccaaggaaaatgttggtgattctgatcgaggaaaatatcaatttgttaaaggcttagatgttggaggaattt |
16968317 |
T |
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| Q |
290 |
cttcagttca |
299 |
Q |
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| T |
16968316 |
catcagttca |
16968307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 179 - 299
Target Start/End: Complemental strand, 16992073 - 16991953
Alignment:
| Q |
179 |
gtgtggatgttggagtgaatgccaagtcaaaagccaaatccaaagaaaatgttggtgattctgatcgaggaaaagatcaatttgttaaaggcttagatgt |
278 |
Q |
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||||| |||||| |||||||||||| ||| || ||||||||| ||||||||||| || |||||| |||||||||||||||||||||||||||||||||| |
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| T |
16992073 |
gtgtgaatgttgaagtgaatgccaaatcagaaaacaaatccaaggaaaatgttggcgactctgatggaggaaaagatcaatttgttaaaggcttagatgt |
16991974 |
T |
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| Q |
279 |
tggaggagtttcttcagttca |
299 |
Q |
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|||||||||||||||| |||| |
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| T |
16991973 |
tggaggagtttcttcatttca |
16991953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 17007992 - 17007925
Alignment:
| Q |
40 |
aatgagaatggtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctc |
107 |
Q |
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||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||| |
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| T |
17007992 |
aatgagaatagtccatcttccacaagtactgatgagttggaacatgcagatcatgctagtgtttcctc |
17007925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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