View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_high_23 (Length: 273)
Name: NF16604_high_23
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_high_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 2352547 - 2352804
Alignment:
| Q |
12 |
caaaggcaagaaatcattggacggacatatgctacgtgtacggctaagatttaatgttcaggggacctcaaaataatagaaaatcctccgtatttttggc |
111 |
Q |
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| T |
2352547 |
caaaggcaagaaatcattggac----atatgctacgtgtacggctaagatttaatgttcaggggacctcaaaataatagaaaatcctccgtatttttggc |
2352642 |
T |
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| Q |
112 |
tttctccggttttgtgtacgggttagggtgtgtcatgtgtaacgagttgatcattaccttgtgacatgtttcttattgaaagagcaaattaattaaggca |
211 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352643 |
tttttccggttttgtgtacgggttagggtgtgtcatgtgtaacgagttgatcattaccttgtgacatgtttcttattgaaagagcaaattaattaaggca |
2352742 |
T |
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| Q |
212 |
tcaattttaatagatacagtgtaggggaccaaatctggttgagaatgtgaatactgtaaaaa |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2352743 |
tcaattttaatagatacagtgtaggggaccaaatctggttgagaatgtgaatactgtaaaaa |
2352804 |
T |
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