View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16604_high_25 (Length: 265)

Name: NF16604_high_25
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16604_high_25
NF16604_high_25
[»] chr3 (13 HSPs)
chr3 (1-246)||(2748884-2749129)
chr3 (1-246)||(2807156-2807401)
chr3 (1-211)||(5412810-5413020)
chr3 (4-246)||(2855817-2856062)
chr3 (1-190)||(2759159-2759348)
chr3 (1-172)||(2818520-2818691)
chr3 (1-184)||(2838604-2838787)
chr3 (1-184)||(2769020-2769203)
chr3 (1-246)||(2797247-2797495)
chr3 (11-246)||(2790253-2790491)
chr3 (9-66)||(22648533-22648590)
chr3 (7-51)||(21945673-21945717)
chr3 (8-48)||(22621288-22621328)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-247)||(6156-6405)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 2749129 - 2748884
Alignment:
Q  1 aactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2749129 aactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttct 2749030  T
Q  101 tcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcctatgctaa 200  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2749029 tcttttgggacttcaataccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttctctctctcctatgctaa 2748930  T
Q  201 tgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacct 246  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  2748929 tgctgcttgaagttccttgttcgtgtgaaatttgaaagttatacct 2748884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 2807401 - 2807156
Alignment:
Q  1 aactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttct 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||| |||||||||||| |||||| ||||    
T  2807401 aactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttct 2807302  T
Q  101 tcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcctatgctaa 200  Q
    ||| ||||   ||||| ||| |||| |||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||   ||||      
T  2807301 tctcttgggaattcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctctagtgctgt 2807202  T
Q  201 tgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacct 246  Q
    ||| |||||| | |||| |||| ||||||||||| |||||||||||    
T  2807201 tgcggcttgatgatccttgttcatgtgaaatttgtaagttatacct 2807156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 5413020 - 5412810
Alignment:
Q  1 aactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttct 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || || || || ||| |||||||||||||||||||||||| ||||    
T  5413020 aactagcttggcaagagtggtttttcctaggccccccattcctaccactgatatgactgtacgttccgctgcaccatccaataaccaaccagacaattct 5412921  T
Q  101 tcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcctatgctaa 200  Q
    |||||||||||||||||||| |||||||||||||||  ||| || || ||||||||||||||||| |||||| ||||||||||| ||||||   ||||      
T  5412920 tcttttggaccttcaattcctacaacttctgtttctgtaatgaatagggaagacagtcgaggatctcgccatcttccattttctgtctctctactgctgt 5412821  T
Q  201 tgctgcttgaa 211  Q
    |||||||||||    
T  5412820 tgctgcttgaa 5412810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 2855817 - 2856062
Alignment:
Q  4 tagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttct 103  Q
    ||||||||||||||| ||||||||||  || |||||||| ||||| || |||||  ||||||||| |  ||| ||||||||||||||||||| |||||||    
T  2855817 tagcttggcaagagtagtttttcctataccccccattcccaccactgaaatcactttgcgctcagatataccttccaataaccaaccagacaattcttct 2855916  T
Q  104 tttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcctatgctaatgc 203  Q
    ||||| |||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||  |||   | |    
T  2855917 tttgggccttcaatgcctacaacttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctccactgcggtttc 2856016  T
Q  204 t---gcttgaagttcctcgttcgtgtgaaatttgaaagttatacct 246  Q
    |   |||||| | |||| | ||||||||||||||||||||||||||    
T  2856017 tttggcttgaggatccttgctcgtgtgaaatttgaaagttatacct 2856062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 2759348 - 2759159
Alignment:
Q  1 aactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttct 100  Q
    |||||||||||||||||||||||| || || || |||||||||||||| || ||||| ||||| ||||||  ||| ||||||||||||||| | ||||||    
T  2759348 aactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataaccaaccatatagttct 2759249  T
Q  101 tcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctct 190  Q
    |||||||| ||||||| ||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||    
T  2759248 tcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctct 2759159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 2818691 - 2818520
Alignment:
Q  1 aactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttct 100  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| ||| |||| ||||||||||||||| | ||||||    
T  2818691 aactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgctcggctgcaccctccaataaccaaccatatagttct 2818592  T
Q  101 tcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccat 172  Q
    ||| | || ||||||| ||| || | ||||||||||||||| ||||||||||||||||||||||||||||||    
T  2818591 tctctcgggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagacagtcgaggatcacgccat 2818520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 2838604 - 2838787
Alignment:
Q  1 aactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttct 100  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| ||||| || |||||||||||| |||| ||||||||||||||| | | ||||    
T  2838604 aactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctcagctgcaccctccaataaccaaccatatatttct 2838703  T
Q  101 tcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttct 184  Q
    ||| |||| ||||||| ||| |||| ||||||||||||||| ||||| |||||||||||||| ||  ||||| |||||||||||    
T  2838704 tctcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttct 2838787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 2769203 - 2769020
Alignment:
Q  1 aactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttct 100  Q
    |||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||| |||| |||| ||||||||||||||| | | ||||    
T  2769203 aactagtttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataaccaaccaaataattct 2769104  T
Q  101 tcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttct 184  Q
    ||| |||| ||||| | ||| |||| |||||||||||||||||| || |||||||  ||||||||||||||| ||||| |||||    
T  2769103 tctcttgggccttccaatcctacaatttctgtttcttcaataaagagggaagacatccgaggatcacgccatcttccactttct 2769020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 2797495 - 2797247
Alignment:
Q  1 aactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttct 100  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||||   || || | |||||||||||||| ||||    
T  2797495 aactagcttggcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaaccaaccagacaattct 2797396  T
Q  101 tcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttc--tctctctcct-atgc 197  Q
    ||  | || ||||||| ||| |||| | | ||||||||||||||||| ||||||||||||||||||| |||| ||| ||| ||  ||||||| ||  ||     
T  2797395 tccctcgggccttcaaatccgacaattgcagtttcttcaataaaaagggaagacagtcgaggatcacaccatcttctattatccgtctctctactgctgt 2797296  T
Q  198 taatgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacct 246  Q
    |  |||||||||| | |||| ||   |||||||||||||||||||||||    
T  2797295 tgttgctgcttgatgatcctggtgtctgtgaaatttgaaagttatacct 2797247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 2790491 - 2790253
Alignment:
Q  11 gcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggac 110  Q
    |||||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||||   || ||||||||||||||||||| ||||||  | || |    
T  2790491 gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttccctcgggc 2790392  T
Q  111 cttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttc--tctctctcct-atgctaatgctgct 207  Q
    |||||| ||| |||| | | ||||||||||| ||||| |||||||  ||||||||| ||||| ||| ||| ||  ||||||| ||  || |  |||||||    
T  2790391 cttcaaatccgacaattgcagtttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgct 2790292  T
Q  208 tgaagttcctcgttcgtgtgaaatttgaaagttatacct 246  Q
    ||| | |||| ||   |||||||||||||||||||||||    
T  2790291 tgatgatcctggtgtctgtgaaatttgaaagttatacct 2790253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 22648533 - 22648590
Alignment:
Q  9 tggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc 66  Q
    |||||||||||||||||||||| |||||||| |||||||| || || || ||||||||    
T  22648533 tggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctc 22648590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 21945717 - 21945673
Alignment:
Q  7 cttggcaagagtggtttttcctaggcctcccattcctaccacgga 51  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||    
T  21945717 cttggctagagtggtttttccttgccctcccattcctaccacgga 21945673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 22621288 - 22621328
Alignment:
Q  8 ttggcaagagtggtttttcctaggcctcccattcctaccac 48  Q
    ||||||||||||| ||||||| | |||||||||||||||||    
T  22621288 ttggcaagagtggattttccttgtcctcccattcctaccac 22621328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 6156 - 6405
Alignment:
Q  1 aactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttct 100  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||| || || || ||||||||||||  ||  ||||||||||||||| | | |||     
T  6156 aactagcttggcaagagtggttttccctatacctcccattcctaccactgaaattacggtgcgctcagctggactctccaataaccaaccatataattcc 6255  T
Q  101 tcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcctatgctaa 200  Q
    ||| |||| ||||| | ||| |||||||| ||||||||||||||||| | ||| | |||||||||||||||| |||||||||||  ||||||| ||||      
T  6256 tctcttgggccttcgaatcctacaacttcagtttcttcaataaaaagggcagataatcgaggatcacgccatcttccattttctgcctctcctgtgctgc 6355  T
Q  201 tgctg---cttgaagttcctcgttcgtgtgaaatttgaaagttatacctt 247  Q
    |||||   ||||| | |||  |||| ||| ||||||||||||||||||||    
T  6356 tgctgacacttgatgatccaggttcatgtaaaatttgaaagttatacctt 6405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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