View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_high_29 (Length: 249)
Name: NF16604_high_29
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 30523949 - 30523727
Alignment:
| Q |
11 |
caaagggtgttttttcctatactactagtgaagtcattttttgaaattatggctaaaatcttgtttgagtgtgtgcctaacaattcattcttttacttcc |
110 |
Q |
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| T |
30523949 |
caaagggtgttttttcctatactactagtgaagtcattttttgaaattatggctaaaatcttgtttgagtgtgtgcctaacaattcattcttttacttcc |
30523850 |
T |
|
| Q |
111 |
ataaccccttttccccaaagtactgttgaaggaagtcctgatcttttttctggagttatgtttactatactttgcattctatctgaacatcggaaacagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30523849 |
ataaccccttttccccaaagtactgttgaaggaagttctgatcttttttctggagttatgtttactatactttgcattctatctgaacatcggaaacagt |
30523750 |
T |
|
| Q |
211 |
atctcagttaatgaacataatct |
233 |
Q |
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||||||||||||||||||||||| |
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| T |
30523749 |
atctcagttaatgaacataatct |
30523727 |
T |
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