View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16604_high_35 (Length: 219)

Name: NF16604_high_35
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16604_high_35
NF16604_high_35
[»] chr3 (10 HSPs)
chr3 (1-219)||(2749112-2749330)
chr3 (1-219)||(5413003-5413221)
chr3 (1-219)||(2838403-2838621)
chr3 (1-219)||(2855613-2855831)
chr3 (1-219)||(2807384-2807602)
chr3 (1-219)||(2769186-2769404)
chr3 (5-219)||(2797478-2797692)
chr3 (1-219)||(2759331-2759549)
chr3 (1-219)||(2818674-2818892)
chr3 (5-165)||(2790491-2790651)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-219)||(5955-6173)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2749330 - 2749112
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2749330 cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat 2749231  T
Q  101 tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2749230 tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa 2749131  T
Q  201 aaactagcttggcaagagt 219  Q
    |||||||||||||||||||    
T  2749130 aaactagcttggcaagagt 2749112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 5413221 - 5413003
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat 100  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| ||| | |||||| |||    
T  5413221 cctcttatgttgcaggtattgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcagttccccgacaaaat 5413122  T
Q  101 tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||    
T  5413121 tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgataccttttggctttcaa 5413022  T
Q  201 aaactagcttggcaagagt 219  Q
    |||||||||||||||||||    
T  5413021 aaactagcttggcaagagt 5413003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2838403 - 2838621
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat 100  Q
    |||||||||||| ||||||||||||||||||  ||| ||||||||||||||| ||||||| ||||||||  |||||| ||||| ||| | |||||| |||    
T  2838403 cctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaat 2838502  T
Q  101 tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||| ||||| |||||||| ||||||||    
T  2838503 tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaa 2838602  T
Q  201 aaactagcttggcaagagt 219  Q
    |||||||||||||||||||    
T  2838603 aaactagcttggcaagagt 2838621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2855613 - 2855831
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat 100  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| |||||| |  |||||| ||||| ||| | |||||| |||    
T  2855613 cctcttatgttgcaggtattgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttcagttccccgacaaaat 2855712  T
Q  101 tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || || |||||||| ||| ||||    
T  2855713 tgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttaccttttggctgtcaa 2855812  T
Q  201 aaactagcttggcaagagt 219  Q
    ||| |||||||||||||||    
T  2855813 aaattagcttggcaagagt 2855831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2807602 - 2807384
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat 100  Q
    |||||||||||||||||||||||||||||||| ||| ||||| | |||||||| |||| ||||| | |   |||||| ||||| |||   | |||| |||    
T  2807602 cctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaat 2807503  T
Q  101 tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa 200  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||||| || |||| ||| ||| ||||    
T  2807502 tgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttaccgtttggctatcaa 2807403  T
Q  201 aaactagcttggcaagagt 219  Q
    |||||||||||||||||||    
T  2807402 aaactagcttggcaagagt 2807384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2769404 - 2769186
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat 100  Q
    |||||||||||| ||||||| ||| || ||||| |  ||||||  |||||||||||||||||||||||  || ||||  |||| |||   | |||| |||    
T  2769404 cctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttcagtttcctgacaaaat 2769305  T
Q  101 tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa 200  Q
    ||||||||||| |||||||  || |||||||||||||| |||||||||||||||| |||||||||||||||||||| ||| | |||||||| ||| |||     
T  2769304 tgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttaccttttggctgtcat 2769205  T
Q  201 aaactagcttggcaagagt 219  Q
    ||||||| |||||||||||    
T  2769204 aaactagtttggcaagagt 2769186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 2797692 - 2797478
Alignment:
Q  5 ttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaattgct 104  Q
    ||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||||||||| ||||| |  || |||    | ||| |||| ||    
T  2797692 ttatgttgcaggtattgcctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggctttcagtttcgctacaaaattcct 2797593  T
Q  105 ccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaac 204  Q
    |||||||||| ||||| |  || ||||| ||||| |||||||||||||||| |||||||||||||||||| | || || ||||||||  || || |||||    
T  2797592 ccatcatgttgatcaatatccccctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttaccttttgactgtcgaaaac 2797493  T
Q  205 tagcttggcaagagt 219  Q
    |||||||||||||||    
T  2797492 tagcttggcaagagt 2797478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2759549 - 2759331
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat 100  Q
    |||||||||||  ||||||| ||| || ||| |||| ||||||  ||||||||||||||||||| |||   |||||| ||||| |||   | |||| |||    
T  2759549 cctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcagtttcctgacaaaat 2759450  T
Q  101 tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa 200  Q
    ||| ||||||| |||||||  || |||||||||||||| ||||||||||||  || ||||||  |||||||||| |||| || |||||||| ||| ||||    
T  2759449 tgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttaccttttggctgtcaa 2759350  T
Q  201 aaactagcttggcaagagt 219  Q
    |||||||||||||||||||    
T  2759349 aaactagcttggcaagagt 2759331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2818892 - 2818674
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat 100  Q
    |||||||||||  ||||||| ||| || |||||||| ||| ||  ||||||||||||| |||| ||||  |||  || ||||| ||    | || | |||    
T  2818892 cctcttatgttctaggtatttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcagcttcctgataaaat 2818793  T
Q  101 tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa 200  Q
    ||||||||||| |||||||  || |||||||||||||| ||||||||||||  || |||||| ||||||||||| |||| || |||||||| ||| ||||    
T  2818792 tgctccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttaccttttggctgtcaa 2818693  T
Q  201 aaactagcttggcaagagt 219  Q
    |||||||||||||||||||    
T  2818692 aaactagcttggcaagagt 2818674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 2790651 - 2790491
Alignment:
Q  5 ttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaattgct 104  Q
    ||||||| ||||||||||||||||| || ||| ||||||| |||||||||||||||||||||||||| ||||| | ||| |||    | ||| |||| ||    
T  2790651 ttatgtttcaggtattgcctcacttgtagaatgagtgacttgtcatccattttgtgtaacatctgcaaaagagggccttcagtttcgctacaaaattcct 2790552  T
Q  105 ccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacg 165  Q
    |||||||||| ||||| |  || ||||| ||| | ||||||||||| |||| |||||||||    
T  2790551 ccatcatgttgatcaatatccccctcacggtgaatgattgagaaacggtgatgcaagcacg 2790491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 5955 - 6173
Alignment:
Q  1 cctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaat 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||| ||||| |||   |||||| |||    
T  5955 cctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaat 6054  T
Q  101 tgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaa 200  Q
    ||||||||||||||||| |  || |||||||| ||||| | ||||||||||| || |||||||||||||||||| |||| || |||||||| ||| ||||    
T  6055 tgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaa 6154  T
Q  201 aaactagcttggcaagagt 219  Q
    |||||||||||||||||||    
T  6155 aaactagcttggcaagagt 6173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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