View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16604_high_5 (Length: 551)

Name: NF16604_high_5
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16604_high_5
NF16604_high_5
[»] chr3 (20 HSPs)
chr3 (10-535)||(9101174-9101699)
chr3 (10-464)||(9026100-9026537)
chr3 (10-464)||(9034566-9035003)
chr3 (9-464)||(9029058-9029499)
chr3 (10-319)||(8746900-8747209)
chr3 (10-240)||(9023396-9023626)
chr3 (69-273)||(9015428-9015631)
chr3 (82-212)||(9108812-9108942)
chr3 (61-206)||(8957118-8957263)
chr3 (60-196)||(8965272-8965408)
chr3 (66-196)||(8962563-8962693)
chr3 (66-242)||(9019290-9019466)
chr3 (64-206)||(8755581-8755723)
chr3 (75-202)||(9112118-9112245)
chr3 (59-196)||(8988340-8988477)
chr3 (332-431)||(9015672-9015771)
chr3 (365-464)||(9023730-9023828)
chr3 (466-535)||(27717904-27717972)
chr3 (474-533)||(12145099-12145157)
chr3 (497-535)||(53589079-53589117)
[»] chr6 (4 HSPs)
chr6 (466-535)||(241976-242044)
chr6 (474-533)||(28712471-28712529)
chr6 (466-535)||(13002778-13002846)
chr6 (466-535)||(24154101-24154169)
[»] chr7 (3 HSPs)
chr7 (467-535)||(25621047-25621114)
chr7 (473-535)||(4978777-4978839)
chr7 (466-535)||(7524684-7524752)
[»] chr1 (4 HSPs)
chr1 (462-535)||(33379285-33379357)
chr1 (466-513)||(13202055-13202101)
chr1 (475-533)||(25018745-25018802)
chr1 (466-535)||(23455251-23455320)
[»] chr4 (2 HSPs)
chr4 (466-535)||(26654068-26654136)
chr4 (470-535)||(24924966-24925030)
[»] chr8 (12 HSPs)
chr8 (466-537)||(6017635-6017705)
chr8 (466-535)||(19709433-19709502)
chr8 (470-535)||(5892690-5892754)
chr8 (470-535)||(22454655-22454719)
chr8 (470-535)||(28291507-28291572)
chr8 (470-535)||(32352277-32352341)
chr8 (470-535)||(32368938-32369002)
chr8 (466-534)||(15340855-15340922)
chr8 (466-534)||(15429920-15429987)
chr8 (466-534)||(15521224-15521291)
chr8 (497-535)||(22449995-22450033)
chr8 (466-535)||(41651944-41652013)
[»] chr2 (6 HSPs)
chr2 (466-535)||(17676659-17676727)
chr2 (466-535)||(32890490-32890558)
chr2 (466-533)||(21498058-21498124)
chr2 (466-535)||(15437979-15438048)
chr2 (466-535)||(2482115-2482183)
chr2 (466-535)||(28760596-28760664)
[»] scaffold0320 (1 HSPs)
scaffold0320 (466-513)||(6511-6557)
[»] scaffold0167 (1 HSPs)
scaffold0167 (466-513)||(10227-10273)
[»] chr5 (6 HSPs)
chr5 (471-535)||(31532979-31533042)
chr5 (466-535)||(9423217-9423287)
chr5 (466-535)||(10236145-10236213)
chr5 (466-535)||(21390754-21390822)
chr5 (475-536)||(28619255-28619315)
chr5 (466-535)||(36499489-36499557)
[»] scaffold0148 (1 HSPs)
scaffold0148 (470-535)||(23100-23164)


Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 10 - 535
Target Start/End: Original strand, 9101174 - 9101699
Alignment:
Q  10 catcatcagctatgaagttcttccccttctttatggtcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcacc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101174 catcatcagctatgaagttcttccccttctttatggtcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcacc 9101273  T
Q  110 aggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaa 209  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101274 aggccctgatgctggagctgctggttctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaa 9101373  T
Q  210 catgatgattgcacttattttcttgtggatttcatgtaagtagacaagtaatattgacttgttcgggtgcataatgttgttttgtgatacaatgatgatt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101374 catgatgattgcacttattttcttgtggatttcatgtaagtagacaagtaatattgacttgttcgggtgcataatgttgttttgtgatacaatgatgatt 9101473  T
Q  310 gttaggagttaggactcttagcagtttatctatgtatttataagagtgtaagatattttacagtatttacttttacattttattatatattgtaggtgtt 409  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9101474 gttaggagttaggactcttagcagtttatctatgtattttcaagagtgtaagatattttacagtatttccttttacattttattatatattgtaggtgtt 9101573  T
Q  410 aaagtataataaaaaggactttgctatcctttgtcgagtaattattattgtcatgcataaatagtagtttttcatatgaaaaactatgtcgcaaatcact 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9101574 aaagtataataaaaaggactttgctatcctttgtcgagtaattattattgtcatgcataaatagtagtttttcatatgaaaaactatgtcgcaaatcact 9101673  T
Q  510 tatataactctagcactcgaagtacc 535  Q
    ||||||||||||||||||||||||||    
T  9101674 tatataactctagcactcgaagtacc 9101699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 10 - 464
Target Start/End: Original strand, 9026100 - 9026537
Alignment:
Q  10 catcatcagctatgaagttcttccccttctttatggtcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcacc 109  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | || ||||| |||||||||||||||||    
T  9026100 catcatcagctatgaagttcttctccttctttttggtcatcatcttcgccgccaccgtggcctctgcccaagatcttagtccttcgttggctccagcacc 9026199  T
Q  110 aggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaa 209  Q
    |||  ||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| || |||||||||    
T  9026200 aggttctgatgctggagttgctggatctgttacaagttcagtggcaatgatcggagtttcagttgtattgtcaatgatcgccatcttcaaacactaaaaa 9026299  T
Q  210 catgatgattgcacttattttcttgtggatttcatgtaagtagacaagtaatattgacttgttcgggtgcataatgttgttttgtgatacaatgatgatt 309  Q
    ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| | ||||||||||||||||||| ||| |||||||||    
T  9026300 cataatgattccacttattttcttgtggatttcatggaagtagacaagtaatattgacctgttctgatgcataatgttgttttgtggtacgatgatgatt 9026399  T
Q  310 gttaggagttaggactcttagcagtttatctatgtatttataagagtgtaagatattttacagtatttacttttacattttattatatattgtaggtgtt 409  Q
    ||||||                ||||||||||||||||| | |||||||||||||||||| || |||||||||||||||||||||| |||||||||||||    
T  9026400 gttagg----------------agtttatctatgtatttttgagagtgtaagatattttatagcatttacttttacattttattatttattgtaggtgtt 9026483  T
Q  410 aaagtataataaaaaggactttgctatcctttgtcgagtaattattattgtcatg 464  Q
    |||||| |||||| |||||||| | ||   || | ||||||||||||||||||||    
T  9026484 aaagtaaaataaataggactttaccat-ggttcttgagtaattattattgtcatg 9026537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 464
Target Start/End: Original strand, 9034566 - 9035003
Alignment:
Q  10 catcatcagctatgaagttcttccccttctttatggtcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcacc 109  Q
    |||| |||||||| || |||||| |||||||| | |||  ||||||||| |||| |||||||||||||||| |||| ||||| ||||||||||| |||||    
T  9034566 catcttcagctataaaattcttctccttctttttcgtcgccatcttcgctgccatcgtggcctctgcccaagaccttagtccttcgttggctccggcacc 9034665  T
Q  110 aggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaa 209  Q
    ||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  9034666 aggtcctgatgctggagctgctggatctgttgcaagttcggtggctatgatcggagtttcaattgtgttgtcaatgctcgccatcttcaagcactaaaaa 9034765  T
Q  210 catgatgattgcacttattttcttgtggatttcatgtaagtagacaagtaatattgacttgttcgggtgcataatgttgttttgtgatacaatgatgatt 309  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||| ||||||||  ||||||||||||||    
T  9034766 catgatgatttcacttattttcttgtggacttcatgtaagtagacaagtagtattgacttgttctggtgcataatcttgttttgcaatacaatgatgatt 9034865  T
Q  310 gttaggagttaggactcttagcagtttatctatgtatttataagagtgtaagatattttacagtatttacttttacattttattatatattgtaggtgtt 409  Q
     ||||||||||                |||||||||||| | ||||||||||||||||||| |||| || |||||||||| ||||| ||||||||||| |    
T  9034866 cttaggagtta----------------atctatgtatttttgagagtgtaagatattttactgtatctatttttacatttcattatttattgtaggtgct 9034949  T
Q  410 aaagtataataaaaaggactttgctatcctttgtcgagtaattattattgtcatg 464  Q
    ||| || ||||||||||||||| |||| |||||||||||||||||||||||||||    
T  9034950 aaaataaaataaaaaggactttactat-ctttgtcgagtaattattattgtcatg 9035003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 464
Target Start/End: Original strand, 9029058 - 9029499
Alignment:
Q  9 acatcatcagctatgaagttcttccccttctttatggtcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcac 108  Q
    ||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||    
T  9029058 acatcatcaactatgaagttcttctccttctttttggtcatcatcttcgccgccaccgtggcctctgcccaagaccttagtccttcgttggctccagcac 9029157  T
Q  109 caggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaa 208  Q
    |||| |||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  9029158 caggtcctgatgctggagctgctggatctattacaagttcagcggctatgatcggagtttcaattgtgttgtcaatgctcgccatcttcaagcactaaaa 9029257  T
Q  209 acatgat-gattgcacttattttcttgtggatttcatgtaagtagacaagtaatattgacttgttcgggtgcataatgttgttttgtgatacaatgatga 307  Q
    ||||||| |||| |||||||||||||||||||||||||  ||||| |||||||||||||||| ||| |||||||||||||||||||   |||| ||||||    
T  9029258 acatgatggattccacttattttcttgtggatttcatg-gagtaggcaagtaatattgacttattctggtgcataatgttgttttgcagtacagtgatga 9029356  T
Q  308 ttgttaggagttaggactcttagcagtttatctatgtatttataagag---tgtaagatattttacagtatttacttttacattttattatatattgtag 404  Q
    ||||||||                ||||||||||| ||||| | ||||   ||||||||||||||| ||||||| |||||||||| ||||| ||||||||    
T  9029357 ttgttagg----------------agtttatctatctatttttgagagtaatgtaagatattttacggtatttatttttacatttcattatttattgtag 9029440  T
Q  405 gtgttaaagtataataaaaaggactttgctatcctttgtcgagtaattattattgtcatg 464  Q
    |||||| |||| ||||||||||||||| |||| | |||| ||||||||||||||||||||    
T  9029441 gtgttacagtaaaataaaaaggactttactat-cgttgttgagtaattattattgtcatg 9029499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 8746900 - 8747209
Alignment:
Q  10 catcatcagctatgaagttcttccccttctttatggtcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcacc 109  Q
    |||| |||||||||||||||||| |||||||| | ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  8746900 catcctcagctatgaagttcttctccttctttttcgtcttcatcttcgccgccaccctggcctctgcccaagacctcagtccctcgttggctccagcacc 8746999  T
Q  110 aggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaa 209  Q
    ||| ||||||  |||||||| |||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  8747000 aggtcctgatgttggagctgttggatctgttacaaattcagtggctatgattggagtttcaattgtgttgtcaatgctcgccatcttcaagcactaaaaa 8747099  T
Q  210 catgatgattgcacttattttcttgtggatttcatgtaagtagacaagtaatattgacttgttcgggtgcataatgttgttttgtgatacaatgatgatt 309  Q
     ||||||||| |||| |||||||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||||||| | |||| |||| |||    
T  8747100 aatgatgattccactcattttcttgtggatttcatggaagtagacaagtagttttgacttgttccggtgcataatgttgttttgcggtacagtgattatt 8747199  T
Q  310 gttaggagtt 319  Q
    ||| ||||||    
T  8747200 gttgggagtt 8747209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 9023396 - 9023626
Alignment:
Q  10 catcatcagctatgaagttcttccccttctttatggtcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcacc 109  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||    
T  9023396 catcatcagctataaagttcttctccttctttttggtcatcatcttcgccgccacagtggcctctgcccaagaccttagtccctcgttggctccggcacc 9023495  T
Q  110 aggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatctttaagcactaaaaa 209  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||  ||||||||||||||||||||||||| ||||||||||||    
T  9023496 aggtcctgatgctggagctgctggatctgttacaagttcagtggctatggtcggaatttcggttgtattgtcaatgctcgccatcttcaagcactaaaaa 9023595  T
Q  210 catgatgattgcacttattttcttgtggatt 240  Q
    |||||||||| |||| |||||||||||||||    
T  9023596 catgatgattccactcattttcttgtggatt 9023626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 69 - 273
Target Start/End: Original strand, 9015428 - 9015631
Alignment:
Q  69 gcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggagttt 168  Q
    ||||| || ||| ||||||| ||||||||| |||| |||||||| |||||| | ||||| ||||||| |||||||| ||||||| ||||| | |||||||    
T  9015428 gcctcggctcaagacctcagcccctcgttgtctccggcaccaggtcctgatgccggagcagctggatatgttacaaattcagtgactatggttggagttt 9015527  T
Q  169 caattgtattgtcaatgctcgccatctttaagcactaaaaacatgatgattgcacttattttcttgtggatttcatgtaagtagacaagtaatattgact 268  Q
    |||||||||||||||||||||||||||| || ||||||||| || |||||| ||||||||||||||||||||||||| ||||||||||| | ||| ||||    
T  9015528 caattgtattgtcaatgctcgccatcttcaaacactaaaaa-attatgattccacttattttcttgtggatttcatggaagtagacaagcagtatcgact 9015626  T
Q  269 tgttc 273  Q
    |||||    
T  9015627 tgttc 9015631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 9108812 - 9108942
Alignment:
Q  82 acctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattgtattgtc 181  Q
    ||||||||||||| |||||||||||| |||| ||||||   |||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  9108812 acctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaagttcagtggccatgatcggagcttcaattgtcttgtc 9108911  T
Q  182 aatgctcgccatctttaagcactaaaaacat 212  Q
    |||||| ||  |||| ||| |||||||||||    
T  9108912 aatgcttgcactcttgaagaactaaaaacat 9108942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 8957118 - 8957263
Alignment:
Q  61 ccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgat 160  Q
    ||||||||||||| |||||| |||| ||||| ||||| ||||||||||| || |||||  |||||||||| |||| |||||||||||| |||||||||||    
T  8957118 ccaccgtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgacgctggagctgccggatttgttacaagttctgtggctatgat 8957217  T
Q  161 cggagtttcaattgtattgtcaatgctcgccatctttaagcactaa 206  Q
    ||||| |||||||||  |||||||| ||||||| || ||| |||||    
T  8957218 cggagcttcaattgtgctgtcaatggtcgccattttcaagaactaa 8957263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 60 - 196
Target Start/End: Original strand, 8965272 - 8965408
Alignment:
Q  60 gccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatga 159  Q
    ||||| |||||||| |||||| |||| ||||| |||||||||||||||||| | |||||  |||||||||| |||||||||||||||||  |||| ||||    
T  8965272 gccacagtggcctcggcccaagaccttagtccgtcgttggctccagcaccaagtcctgacgctggagctgccggatctgttacaagttctatggcaatga 8965371  T
Q  160 tcggagtttcaattgtattgtcaatgctcgccatctt 196  Q
    |||||| |||||||||  ||||||||||||| |||||    
T  8965372 tcggagcttcaattgtgctgtcaatgctcgcaatctt 8965408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 66 - 196
Target Start/End: Original strand, 8962563 - 8962693
Alignment:
Q  66 gtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggag 165  Q
    |||||||| |||||| |||| ||||||||||| |||||||||||||| |||||| |||||| ||| ||||||||| || |||| ||||||||||||||||    
T  8962563 gtggcctcggcccaagaccttagtccctcgttagctccagcaccaggtcctgatgctggagttgccggatctgttgcaggttctgtggctatgatcggag 8962662  T
Q  166 tttcaattgtattgtcaatgctcgccatctt 196  Q
     |||||||||  | ||||||||||| |||||    
T  8962663 cttcaattgtgctttcaatgctcgctatctt 8962693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 66 - 242
Target Start/End: Original strand, 9019290 - 9019466
Alignment:
Q  66 gtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggag 165  Q
    |||||||| || ||| |||| |||||||| |  ||||| |||||||| ||||||  ||| |||  |||||||||||| |||||||| |||||||||||||    
T  9019290 gtggcctcggctcaagaccttagtccctcatccgctccggcaccaggtcctgatgttggggcttgtggatctgttacgagttcagttgctatgatcggag 9019389  T
Q  166 tttcaattgtattgtcaatgctcgccatctttaagcactaaaaacatgatgattgcacttattttcttgtggatttc 242  Q
     ||||||||| ||||||||||| |||||||| ||| ||| ||||||| ||||   |||| ||||||| |||||||||    
T  9019390 cttcaattgtgttgtcaatgcttgccatcttgaagaactgaaaacatcatgaacccactaattttctggtggatttc 9019466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 64 - 206
Target Start/End: Original strand, 8755581 - 8755723
Alignment:
Q  64 ccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcgg 163  Q
    ||||||| || || ||| |||||||||||||||||||||| |||||||  |||||| | || ||||||||||||||||||| |||||| |||||||| ||    
T  8755581 ccgtggcttcggctcaagacctcagtccctcgttggctccggcaccagatcctgatgccggtgctgctggatctgttacaaattcagttgctatgattgg 8755680  T
Q  164 agtttcaattgtattgtcaatgctcgccatctttaagcactaa 206  Q
    || ||| ||| | ||||| |||||||||||||| ||| |||||    
T  8755681 agcttcgattattttgtctatgctcgccatcttcaagaactaa 8755723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 9112118 - 9112245
Alignment:
Q  75 gcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatgatcggagtttcaattg 174  Q
    |||||| |||||||||||||||||||||| |||||||  |||||| | ||||||| ||||||| |||||| | ||||||||||||| |||| ||  ||||    
T  9112118 gcccaagacctcagtccctcgttggctccggcaccagcacctgataccggagctgttggatctcttacaaatccagtggctatgatgggagctttgattg 9112217  T
Q  175 tattgtcaatgctcgccatctttaagca 202  Q
    | ||||||||||| || |||||||||||    
T  9112218 tgttgtcaatgcttgctatctttaagca 9112245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 59 - 196
Target Start/End: Original strand, 8988340 - 8988477
Alignment:
Q  59 cgccaccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatcctggagctgctggatctgttacaagttcagtggctatg 158  Q
    |||| |||| ||||| |||||| |||| |||||||||||| ||||||||||||| |||||   |||||||||  | |||| ||||||||  |||||||||    
T  8988340 cgccgccgtagcctcggcccaagaccttagtccctcgttgtctccagcaccaggtcctgacgttggagctgccagttctgctacaagttatgtggctatg 8988439  T
Q  159 atcggagtttcaattgtattgtcaatgctcgccatctt 196  Q
    ||||||| |||||| ||| ||||||||||||| |||||    
T  8988440 atcggagcttcaatcgtactgtcaatgctcgctatctt 8988477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 431
Target Start/End: Original strand, 9015672 - 9015771
Alignment:
Q  332 agtttatctatgtatttataagagtgtaagatattttacagtatttacttttacattttattatatattgtaggtgttaaagtataataaaaaggacttt 431  Q
    ||||||||||||||||| | | || || |||||||||||| |||||  |||||||||| ||||| ||||||||||||||||| | |||||||||||||||    
T  9015672 agtttatctatgtatttttgaaagcgtgagatattttacattatttgtttttacatttcattatttattgtaggtgttaaagaaaaataaaaaggacttt 9015771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 365 - 464
Target Start/End: Original strand, 9023730 - 9023828
Alignment:
Q  365 ttttacagtatttacttttacattttattatatattgtaggtgttaaagtataataaaaaggactttgctatcctttgtcgagtaattattattgtcatg 464  Q
    |||||| ||||||| ||||| |||| ||||| ||||||||||||||| | | |||||  | |||||| |||||| |||||||||||||||||||||||||    
T  9023730 ttttaccgtatttatttttatatttcattatttattgtaggtgttaaggaaaaataaggaagactttactatcc-ttgtcgagtaattattattgtcatg 9023828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 27717904 - 27717972
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||| ||||||||||||||||||| || ||| ||||||||||||| || ||||||||||||||||||    
T  27717904 ataaatattagtttttcatatgaaaaa-taggtcccaaatcacttatagaattctagcactcgaagtacc 27717972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 533
Target Start/End: Complemental strand, 12145157 - 12145099
Alignment:
Q  474 tagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagta 533  Q
    ||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||    
T  12145157 tagtttttcatatgaaaaa-tatgtcgcaaatcacttatagaattctagcactcaaagta 12145099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 535
Target Start/End: Original strand, 53589079 - 53589117
Alignment:
Q  497 gtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  53589079 gtcgcaaatcacttatagaattctagcactcgaagtacc 53589117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 241976 - 242044
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||    
T  241976 ataaatagtagtttttcatatgaaaaa-taggtcgcaaatcacttatagaattctagcactcgaagtacc 242044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 533
Target Start/End: Complemental strand, 28712529 - 28712471
Alignment:
Q  474 tagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagta 533  Q
    |||||||||||| ||||||| ||||||||||||||||||| || ||||||||||||||||    
T  28712529 tagtttttcataagaaaaac-atgtcgcaaatcacttatagaattctagcactcgaagta 28712471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 13002778 - 13002846
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||| |||||||||||| ||||||| |  | |||||||| ||||| || ||||||||||||||||||    
T  13002778 ataaataatagtttttcataggaaaaacgaa-tagcaaatcatttatagaattctagcactcgaagtacc 13002846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 24154101 - 24154169
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||| |||||||| ||| ||||||| | ||||||||||| || || || ||||||||||||||||||    
T  24154101 ataaataatagttttttataggaaaaac-aggtcgcaaatcatttgtagaattctagcactcgaagtacc 24154169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 467 - 535
Target Start/End: Original strand, 25621047 - 25621114
Alignment:
Q  467 taaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||    
T  25621047 taaatagtagtttttcatatgaaaaa-taggtcgcaaatcacttataaaattctagcactcgaagtacc 25621114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 535
Target Start/End: Original strand, 4978777 - 4978839
Alignment:
Q  473 gtagtttttcatatgaaaaactatgtcgcaaatcacttata-taactctagcactcgaagtacc 535  Q
    |||||||||||||||||||| || ||||||||| |||||||  || ||||||||||||||||||    
T  4978777 gtagtttttcatatgaaaaa-taggtcgcaaattacttatagaaattctagcactcgaagtacc 4978839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 7524684 - 7524752
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||||||||||||||||||| |||| || ||| ||||||||||||| || | |||||||  |||||||    
T  7524684 ataaatagtagtttttcatatggaaaa-taggtcacaaatcacttatagaattatagcacttcaagtacc 7524752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 462 - 535
Target Start/End: Original strand, 33379285 - 33379357
Alignment:
Q  462 atgcataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||||    
T  33379285 atgcataaataatagtttttcatatgaaaaatta-gtcgcaaatcacttataaaattctagtactcgaagtacc 33379357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 513
Target Start/End: Original strand, 13202055 - 13202101
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttata 513  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||    
T  13202055 ataaatagtagtttttcataggaaaaac-atgtcgcaaatcacttata 13202101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 533
Target Start/End: Complemental strand, 25018802 - 25018745
Alignment:
Q  475 agtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagta 533  Q
    ||||||||||||||||||| | ||||||||||||||||| || ||| ||||||||||||    
T  25018802 agtttttcatatgaaaaac-aggtcgcaaatcacttatagaattctggcactcgaagta 25018745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 23455320 - 23455251
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||| ||||||||||||| ||||| |  || ||||||| |||||| || ||||||||||||||||||    
T  23455320 ataaataatagtttttcatataaaaaaattggttgcaaatctcttatagaattctagcactcgaagtacc 23455251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 26654068 - 26654136
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||||||||||||||||||||||| ||  |||||||||||||||| || | ||||||||||||||||    
T  26654068 ataaatagtagtttttcatatgaaaaa-tagatcgcaaatcacttatagaattttagcactcgaagtacc 26654136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 24925030 - 24924966
Alignment:
Q  470 atagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||||||||||| |||||||   | |||||||||||||||| || ||||||||||||||||||    
T  24925030 atagtagtttttcatttgaaaaaaggt-tcgcaaatcacttatagaattctagcactcgaagtacc 24924966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 466 - 537
Target Start/End: Complemental strand, 6017705 - 6017635
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacctg 537  Q
    ||||||| |||||||||||| ||||||| ||||||||||| | ||||| || ||||||||||||||||||||    
T  6017705 ataaataatagtttttcataggaaaaac-atgtcgcaaattatttatagaattctagcactcgaagtacctg 6017635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 19709433 - 19709502
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||| |||||||||||||||||||| || || |||||||||||||| || |||||||||  |||||||    
T  19709433 ataaatggtagtttttcatatgaaaaaataggtggcaaatcacttatagaattctagcacttaaagtacc 19709502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 5892754 - 5892690
Alignment:
Q  470 atagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||||||||||||||||||||   ||| ||||||| ||||| || ||||||||||||||||||    
T  5892754 atagtagtttttcatatgaaaaac-gggtcacaaatcatttatagaattctagcactcgaagtacc 5892690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 535
Target Start/End: Original strand, 22454655 - 22454719
Alignment:
Q  470 atagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||||||||||||| |||||| |  ||||||||||||||||| || |||||||||| |||||||    
T  22454655 atagtagtttttcataagaaaaa-tgggtcgcaaatcacttatagaattctagcactcaaagtacc 22454719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 535
Target Start/End: Original strand, 28291507 - 28291572
Alignment:
Q  470 atagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||| ||||||||| ||||||    ||||||||||||||||| || ||||||||||||||||||    
T  28291507 atagtaatttttcatacgaaaaaaatggtcgcaaatcacttatagaattctagcactcgaagtacc 28291572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 32352341 - 32352277
Alignment:
Q  470 atagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||||||||||||| |||||||   ||||||||||||||||| || | ||||||||||||||||    
T  32352341 atagtagtttttcataagaaaaacgg-gtcgcaaatcacttatagaattatagcactcgaagtacc 32352277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 32369002 - 32368938
Alignment:
Q  470 atagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||||||||||||| |||||||   ||||||||||||||||| || | ||||||||||||||||    
T  32369002 atagtagtttttcataagaaaaacgg-gtcgcaaatcacttatagaattatagcactcgaagtacc 32368938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 534
Target Start/End: Original strand, 15340855 - 15340922
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtac 534  Q
    ||||||| ||||||||||||||||||| |  ||||||||||| ||||| || |||||||||| ||||||    
T  15340855 ataaataatagtttttcatatgaaaaa-ttggtcgcaaatcatttatagaattctagcactcaaagtac 15340922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 534
Target Start/End: Original strand, 15429920 - 15429987
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtac 534  Q
    ||||||| ||||||||||||||||||| |  ||||||||||| ||||| || |||||||||| ||||||    
T  15429920 ataaataatagtttttcatatgaaaaa-ttggtcgcaaatcatttatagaattctagcactcaaagtac 15429987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 534
Target Start/End: Original strand, 15521224 - 15521291
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtac 534  Q
    ||||||| ||||||||||||||||||| |  ||||||||||| ||||| || |||||||||| ||||||    
T  15521224 ataaataatagtttttcatatgaaaaa-ttggtcgcaaatcatttatagaattctagcactcaaagtac 15521291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 535
Target Start/End: Original strand, 22449995 - 22450033
Alignment:
Q  497 gtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  22449995 gtcgcaaatcacttatagaattctagcactcgaagtacc 22450033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 41651944 - 41652013
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||||  ||||||||||| |||||||   |||| |||||| ||||| || ||||||||||||||||||    
T  41651944 ataaataagagtttttcataggaaaaacagggtcggaaatcatttatagaattctagcactcgaagtacc 41652013  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 17676727 - 17676659
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||||||||||||||||||| |||| |  ||| ||||||||||||| || ||||||||||||||||||    
T  17676727 ataaatagtagtttttcatatggaaaa-tgggtcacaaatcacttatagaattctagcactcgaagtacc 17676659  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 32890558 - 32890490
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||||||||||| |||||  |||| || ||||||||||||||||| || ||||||||||||||||||    
T  32890558 ataaatagtagttttccatatcgaaaa-taggtcgcaaatcacttataaaattctagcactcgaagtacc 32890490  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 533
Target Start/End: Original strand, 21498058 - 21498124
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagta 533  Q
    ||||||||||||||||||||||| ||| || ||||||||||| ||||| || ||||||||| ||||||    
T  21498058 ataaatagtagtttttcatatgagaaa-taggtcgcaaatcatttatagaattctagcacttgaagta 21498124  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 15437979 - 15438048
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttata-taactctagcactcgaagtacc 535  Q
    |||||| |||||||||||||||||||| || ||||||||||||| |||  || ||||||||||||||||||    
T  15437979 ataaattgtagtttttcatatgaaaaa-taggtcgcaaatcactaatagaaattctagcactcgaagtacc 15438048  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 2482183 - 2482115
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||||| ||||||||||  |||||| |  ||||||||||||||||| || ||||||||||||||||||    
T  2482183 ataaatagaagtttttcattcgaaaaa-tgggtcgcaaatcacttatagaattctagcactcgaagtacc 2482115  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 28760596 - 28760664
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||||  ||||||||||||||||||| | | ||||||||| ||||| || ||||||||||||||||||    
T  28760596 ataaataagagtttttcatatgaaaaacaa-gacgcaaatcatttataaaattctagcactcgaagtacc 28760664  T

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Target: scaffold0320 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 513
Target Start/End: Complemental strand, 6557 - 6511
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttata 513  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||    
T  6557 ataaatagtagtttttcatatgaaaaa-taggtcgcaaatcacttata 6511  T

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Target: scaffold0167 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 513
Target Start/End: Original strand, 10227 - 10273
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttata 513  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||    
T  10227 ataaatagtagtttttcatatgaaaaa-taggtcgcaaatcacttata 10273  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 535
Target Start/End: Original strand, 31532979 - 31533042
Alignment:
Q  471 tagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||| |||| |||||| |||| || ||||||||||||||||| || ||||||||||||||||||    
T  31532979 tagtacttttccatatggaaaa-taggtcgcaaatcacttatagaattctagcactcgaagtacc 31533042  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 9423287 - 9423217
Alignment:
Q  466 ataaatagtagtttttcat-atgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||| ||||||||||| | ||||||  | ||||||||||| ||||| || ||||||||||||||||||    
T  9423287 ataaataatagtttttcatgaagaaaaaaaaggtcgcaaatcatttataaaattctagcactcgaagtacc 9423217  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 10236213 - 10236145
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||| ||||||||||||| |||||| |  ||| ||||||| |||||||| |||||||||| |||||||    
T  10236213 ataaattgtagtttttcataagaaaaa-tgggtcacaaatcatttatataattctagcactcaaagtacc 10236145  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 535
Target Start/End: Complemental strand, 21390822 - 21390754
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||| ||||||||||||||||||| || ||| ||||| | ||||| || || |||||||||||||||    
T  21390822 ataaataatagtttttcatatgaaaaa-taggtcacaaattatttatagaattcaagcactcgaagtacc 21390754  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 536
Target Start/End: Original strand, 28619255 - 28619315
Alignment:
Q  475 agtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacct 536  Q
    ||||||||||| |||||| |  ||||||||||||||||| || ||||||||| |||||||||    
T  28619255 agtttttcataagaaaaa-tgggtcgcaaatcacttatagaattctagcactagaagtacct 28619315  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 535
Target Start/End: Original strand, 36499489 - 36499557
Alignment:
Q  466 ataaatagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    ||||||| ||||||||||||| ||||| || |||| |||||||||||| || ||||  ||||||||||||    
T  36499489 ataaataatagtttttcatataaaaaa-taggtcgtaaatcacttatagaattctaaaactcgaagtacc 36499557  T

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Target: scaffold0148 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 23164 - 23100
Alignment:
Q  470 atagtagtttttcatatgaaaaactatgtcgcaaatcacttatataactctagcactcgaagtacc 535  Q
    |||||||||||||||||||||||| | ||| ||||||| ||||| || ||| |||||| |||||||    
T  23164 atagtagtttttcatatgaaaaac-aagtcacaaatcatttatagaattctcgcactcaaagtacc 23100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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