View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16604_high_7 (Length: 446)

Name: NF16604_high_7
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16604_high_7
NF16604_high_7
[»] chr5 (6 HSPs)
chr5 (386-427)||(12820178-12820219)
chr5 (386-427)||(12825069-12825110)
chr5 (386-427)||(30732543-30732584)
chr5 (386-427)||(3418653-3418694)
chr5 (386-427)||(42513590-42513631)
chr5 (386-425)||(27117392-27117431)
[»] chr3 (4 HSPs)
chr3 (386-427)||(19920458-19920499)
chr3 (386-427)||(2364147-2364188)
chr3 (386-427)||(10323800-10323841)
chr3 (386-417)||(7312647-7312678)
[»] chr1 (4 HSPs)
chr1 (386-427)||(51052350-51052391)
chr1 (386-427)||(11909334-11909375)
chr1 (386-427)||(6050473-6050514)
chr1 (386-427)||(35540919-35540960)
[»] chr4 (5 HSPs)
chr4 (386-428)||(47686123-47686165)
chr4 (386-427)||(13271120-13271161)
chr4 (386-427)||(23642820-23642861)
chr4 (386-427)||(159920-159961)
chr4 (394-427)||(47418682-47418715)
[»] chr2 (1 HSPs)
chr2 (386-427)||(4552039-4552080)
[»] scaffold0369 (1 HSPs)
scaffold0369 (386-425)||(11436-11475)
[»] chr8 (4 HSPs)
chr8 (386-425)||(171973-172012)
chr8 (386-427)||(7924256-7924297)
chr8 (386-427)||(8299673-8299714)
chr8 (386-427)||(20496954-20496995)
[»] scaffold0034 (1 HSPs)
scaffold0034 (386-427)||(106072-106113)
[»] chr7 (2 HSPs)
chr7 (386-427)||(4938357-4938398)
chr7 (386-427)||(31177534-31177575)
[»] chr6 (1 HSPs)
chr6 (386-425)||(12733995-12734034)


Alignment Details
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 12820219 - 12820178
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12820219 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 12820178  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 12825069 - 12825110
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12825069 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 12825110  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 30732584 - 30732543
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  30732584 ctaccacgcctaaccaatcccgcaccatcggctataatgcac 30732543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 3418653 - 3418694
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  3418653 ctaccactcctaaccaatgccgcaccatcggccataatgcac 3418694  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 42513590 - 42513631
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  42513590 ctaccactcctaaccaatgccgcaccatcggccataatgcac 42513631  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 27117431 - 27117392
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgc 425  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  27117431 ctaccactcctaaccaatcccacaccatcggccataatgc 27117392  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 19920499 - 19920458
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19920499 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 19920458  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 2364147 - 2364188
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  2364147 ctaccactcctaaccaatgccgcaccatcggccataatgcac 2364188  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 10323841 - 10323800
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  10323841 ctaccactcctaaccaatgccgcaccatcggccataatgcac 10323800  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 417
Target Start/End: Original strand, 7312647 - 7312678
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggc 417  Q
    ||||||||||||||||||||||||||||||||    
T  7312647 ctaccacgcctaaccaatcccgcaccatcggc 7312678  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 51052350 - 51052391
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  51052350 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 51052391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 11909375 - 11909334
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  11909375 ctaccacgcctaaccaatcctgcaccatcggccataatgcac 11909334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 6050473 - 6050514
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  6050473 ctaccactcctaaccaatgccgcaccatcggccataatgcac 6050514  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 35540919 - 35540960
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  35540919 ctaccactcctaaccaatgccgcaccatcggccataatgcac 35540960  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 386 - 428
Target Start/End: Complemental strand, 47686165 - 47686123
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcact 428  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  47686165 ctaccactcctaaccaatcccgcaccatcggccataatgcact 47686123  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 13271161 - 13271120
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  13271161 ctaccactcctaaccaatgccgcaccatcggccataatgcac 13271120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 23642861 - 23642820
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  23642861 ctaccactcctaaccaatgccgcaccatcggccataatgcac 23642820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 159961 - 159920
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    |||||||  ||||||||| |||||||||||||||||||||||    
T  159961 ctaccacttctaaccaatgccgcaccatcggccataatgcac 159920  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Original strand, 47418682 - 47418715
Alignment:
Q  394 cctaaccaatcccgcaccatcggccataatgcac 427  Q
    |||||||||| |||||||||||||||||||||||    
T  47418682 cctaaccaatgccgcaccatcggccataatgcac 47418715  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 4552039 - 4552080
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  4552039 ctaccacgcctaaccaatcccgcaccatcggtcataatgcac 4552080  T

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Target: scaffold0369 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 11475 - 11436
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgc 425  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  11475 ctaccactcctaaccaatcccgcaccatcggccataatgc 11436  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 425
Target Start/End: Original strand, 171973 - 172012
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgc 425  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  171973 ctaccactcctaaccaatcccgcaccatcggccataatgc 172012  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 7924256 - 7924297
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  7924256 ctaccactcctaaccaatgccgcaccatcggccataatgcac 7924297  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 8299673 - 8299714
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  8299673 ctaccactcctaaccaatgccgcaccatcggccataatgcac 8299714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 20496954 - 20496995
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  20496954 ctaccactcctaaccaatgccgcaccatcggccataatgcac 20496995  T

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Target: scaffold0034 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 106113 - 106072
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  106113 ctaccactcctaaccaatgccgcaccatcggccataatgcac 106072  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 4938398 - 4938357
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  4938398 ctaccactcctaaccaatgccgcaccatcggccataatgcac 4938357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 427
Target Start/End: Complemental strand, 31177575 - 31177534
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgcac 427  Q
    ||||||| |||||||||| |||||||||||||||||||||||    
T  31177575 ctaccactcctaaccaatgccgcaccatcggccataatgcac 31177534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Original strand, 12733995 - 12734034
Alignment:
Q  386 ctaccacgcctaaccaatcccgcaccatcggccataatgc 425  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  12733995 ctaccactcctaaccaatcctgcaccatcggccataatgc 12734034  T

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