View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16604_low_10 (Length: 438)
Name: NF16604_low_10
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 33355653 - 33355245
Alignment:
| Q |
1 |
tgaaattcctcagataatcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagtcaaatattca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33355653 |
tgaaattcctcagataatcaccatttttcgcaacaagtcaagccatggaatttcccttgcctttctccttacttgggtagcagggttagtcaaatattca |
33355554 |
T |
|
| Q |
101 |
ttatatacacactctcttttttgtttccatcagttatgcatttaatgaaacagttcatcaacnnnnnnncacattctaatacttactagaaaaatccatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |
|
|
| T |
33355553 |
ttatatacacactctcttttttgtttccatcagttatgcatttaatgaaacagttcatcaactttttttcacattataatacttactagcaaaatccatt |
33355454 |
T |
|
| Q |
201 |
ggatcatgttagttagcttaaatgttatgtagcattga--tattacatattaaagatgtgtctgatgtcaaacatgtgtaggcgctcaacaccaacatga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
33355453 |
ggatcatgttagttagcttaaatgttatgtagcattgatctattacatattaaagatgtgtctgatgtcaaacatgtgtaggcgttcaacatccacatga |
33355354 |
T |
|
| Q |
299 |
tacaaacacatgtagttacttttaannnnnnncgagtattatctgatgttcatgtctgtgtctgtgtttgaatgattgtgaacgatgtctaatatgttta |
398 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33355353 |
tacaaacacatgtagttacatttaa--------------tatctgatgttcatgtgtgtgtctgtgtttgaatgattgtgaacgatgtctaatatgtgta |
33355268 |
T |
|
| Q |
399 |
gcattcgacacccacatgataca |
421 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
33355267 |
acgctcgacacccacatgataca |
33355245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University