View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_low_11 (Length: 423)
Name: NF16604_low_11
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 147 - 412
Target Start/End: Complemental strand, 17080759 - 17080494
Alignment:
| Q |
147 |
aactttacaaccagcattgttaaggatgctgaaactaaaagcagcagcaactatgcagttccttatactttaataagagaatacaaataaaggaaaatga |
246 |
Q |
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| T |
17080759 |
aactttacaaccagcattgttaaggatgttgaaactaaaagcagcagcaactatgcagttccttatactttaataagagaatacaaataaaggaaaatga |
17080660 |
T |
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| Q |
247 |
cgatgaaaacaaaataacgtatatgcatattttgagataatgccaaatttccaactgccaaaaccatctttgagagatttagaaactcttataaaacagt |
346 |
Q |
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| T |
17080659 |
ggatgaaaacaaaataacttatatgcatattttgagataatgccaaatttccaattgccaaaaccatctttgagagatttagaaactcttataaaacagt |
17080560 |
T |
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| Q |
347 |
gccctctctatctctacatactctatgaaggattcaagattcaaaggaaacaatgattattagtat |
412 |
Q |
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| T |
17080559 |
gccctctctatctctacatactctatgaaggattcaagattcaaaggaaacaatgattattagtat |
17080494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 35212616 - 35212524
Alignment:
| Q |
147 |
aactttacaaccagcattgttaaggatgctgaaactaaaagcagcagcaactatgcagttccttatactttaataagagaatacaaataaagg |
239 |
Q |
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| T |
35212616 |
aactttacaaccagcattgttaaggatactgaaactaaaatcagcagcaaatatgcagttccttatactttaataagagaatacaaataaagg |
35212524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 224 - 410
Target Start/End: Complemental strand, 35212505 - 35212334
Alignment:
| Q |
224 |
agaatacaaataaaggaaaatgacgatgaaaacaaaataacgtatatgcatattttgagataatgccaaatttccaactgccaaaaccatctttgagaga |
323 |
Q |
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||||||||||||||||||| ||| ||||||| |||||| ||||||| ||||||||||||||||||||| | || |||||||||||||||||| |
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| T |
35212505 |
agaatacaaataaaggaaactgagaatgaaaa-aaaatagcgtatatccatattttgagataatgccaattgtc--------aaaaccatctttgagaga |
35212415 |
T |
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| Q |
324 |
tttagaaactcttataaaacagtgccctctctatctctacatactctatgaaggattcaagattcaaaggaaacaatgattattagt |
410 |
Q |
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|||||||||||||| ||||||||| || ||||||||| ||||||||||||| |||||||||| |||||||||||| |||||| |
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| T |
35212414 |
tttagaaactcttacaaaacagtg------ctctctctacattctctatgaaggatacaagattcaatggaaacaatgatcattagt |
35212334 |
T |
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