View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16604_low_12 (Length: 378)
Name: NF16604_low_12
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_12 |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 30112313 - 30112059
Alignment:
| Q |
10 |
acatcatcatttgaagttagtatatgtctttttcagattgaaaggaataaagagcagaggcaatatgtgtggttttgcagttttgagtta-----tgtat |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30112313 |
acatcatcatttgaagttagtatatgtctttttcagattcaaaggaataaagagcagaggcaatatgtgtggttttgcagttttgagttaagttatgtat |
30112214 |
T |
|
| Q |
105 |
caaatgtaagcttttgagtggnnnnnnngatctaaaatttatgtatcagaagcacttggattcctgctgatagaaaattagtggaaaaaagatctataaa |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30112213 |
caaatgtaagcttttgagtggaaaaaa-gatctaaaatt-atgtatcagaagcacttggattcctgctgatagaaaattagtggaaaaaagatcta--aa |
30112118 |
T |
|
| Q |
205 |
atgcatccactccaaagagttctaaaatttcatgcatcaagattgaagattcaaagtaa |
263 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30112117 |
atgcatccactccaaagagttctaaaatgtcatgcatcaagattgaagattcaaagtaa |
30112059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 301 - 363
Target Start/End: Complemental strand, 30112048 - 30111986
Alignment:
| Q |
301 |
atgtctttagtgaaatccttttggctatctaatgttttgttcaccctttcgtagttgaaattt |
363 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30112048 |
atgtctttagtgaaatcattttggctatctaatgttttgttcaccctttcgtagttgaaattt |
30111986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 150 - 363
Target Start/End: Original strand, 6918 - 7130
Alignment:
| Q |
150 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaa-gatctataaaatgcatccactccaaagagttctaaaatttcatgcatcaagatt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| ||||||| |||| ||| |||| |
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| T |
6918 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctg--aaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgatt |
7015 |
T |
|
| Q |
249 |
gaagattcaaagtaatcaaggagcatgatttggcaatattagttattctgacatgtctttagtgaaatccttttggctatctaatgttttgttcaccctt |
348 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||| | ||||| |||||||||||| | ||||||||||||||| |||||| ||||| |
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|
| T |
7016 |
gaagattcaaagtaatcaaggagcattatttggtaatattagttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctt |
7115 |
T |
|
| Q |
349 |
tcgtagttgaaattt |
363 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
7116 |
tcttagttaaaattt |
7130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 150 - 363
Target Start/End: Original strand, 16831 - 17043
Alignment:
| Q |
150 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaa-gatctataaaatgcatccactccaaagagttctaaaatttcatgcatcaagatt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| ||||||| |||| ||| |||| |
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|
| T |
16831 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctg--aaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgatt |
16928 |
T |
|
| Q |
249 |
gaagattcaaagtaatcaaggagcatgatttggcaatattagttattctgacatgtctttagtgaaatccttttggctatctaatgttttgttcaccctt |
348 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||| | ||||| |||||||||||| | ||||||||||||||| |||||| ||||| |
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|
| T |
16929 |
gaagattcaaagtaatcaaggagcattatttggtaatattagttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctt |
17028 |
T |
|
| Q |
349 |
tcgtagttgaaattt |
363 |
Q |
| |
|
|| ||||| |||||| |
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|
| T |
17029 |
tcttagttaaaattt |
17043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 150 - 363
Target Start/End: Complemental strand, 22151 - 21939
Alignment:
| Q |
150 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaa-gatctataaaatgcatccactccaaagagttctaaaatttcatgcatcaagatt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| ||||||| |||| ||| |||| |
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|
| T |
22151 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctg--aaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgatt |
22054 |
T |
|
| Q |
249 |
gaagattcaaagtaatcaaggagcatgatttggcaatattagttattctgacatgtctttagtgaaatccttttggctatctaatgttttgttcaccctt |
348 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||| | ||||| |||||||||||| | ||||||||||||||| |||||| ||||| |
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|
| T |
22053 |
gaagattcaaagtaatcaaggagcattatttggtaatattagttatgccgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctt |
21954 |
T |
|
| Q |
349 |
tcgtagttgaaattt |
363 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
21953 |
tcttagttaaaattt |
21939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 150 - 363
Target Start/End: Complemental strand, 51033 - 50821
Alignment:
| Q |
150 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaa-gatctataaaatgcatccactccaaagagttctaaaatttcatgcatcaagatt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| | ||||||| |||| |||| |||| |
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|
| T |
51033 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctg--aaatgcatccaccgcaaagattcctaaaatgccatggatcatgatt |
50936 |
T |
|
| Q |
249 |
gaagattcaaagtaatcaaggagcatgatttggcaatattagttattctgacatgtctttagtgaaatccttttggctatctaatgttttgttcaccctt |
348 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||| | ||||||||||||||| |||||| ||||| |
|
|
| T |
50935 |
gaagattcaaagtaatcaaggagcattatttggtaatattagttatgtcgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctt |
50836 |
T |
|
| Q |
349 |
tcgtagttgaaattt |
363 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
50835 |
tcttagttaaaattt |
50821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 150 - 363
Target Start/End: Original strand, 44498535 - 44498747
Alignment:
| Q |
150 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaa-gatctataaaatgcatccactccaaagagttctaaaatttcatgcatcaagatt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| | ||||||| |||| |||| |||| |
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|
| T |
44498535 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctg--aaatgcatccaccgcaaagattcctaaaatgccatggatcatgatt |
44498632 |
T |
|
| Q |
249 |
gaagattcaaagtaatcaaggagcatgatttggcaatattagttattctgacatgtctttagtgaaatccttttggctatctaatgttttgttcaccctt |
348 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||| | ||||||||||||||| |||||| ||||| |
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|
| T |
44498633 |
gaagattcaaagtaatcaaggagcattatttggtaatattagttatgtcgacatctctttagtgaaaccattttggctatctaattgtttgttgtccctt |
44498732 |
T |
|
| Q |
349 |
tcgtagttgaaattt |
363 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
44498733 |
tcttagttaaaattt |
44498747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 150 - 333
Target Start/End: Original strand, 3381137 - 3381316
Alignment:
| Q |
150 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaa-gatctataaaatgcatccactccaaagagttctaaaatttcatgcatcaagatt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||| ||||||| |||| ||| |||| |
|
|
| T |
3381137 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctg--aaatgcatccacctc---gagtcctaaaatgccatggatcgtgatt |
3381231 |
T |
|
| Q |
249 |
gaagattcaaagtaatcaaggagcatgatttggcaatattagttattctgacatgtctttagtgaaatccttttggctatctaat |
333 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
3381232 |
gaagattcaaagtaatcaaggagcattgtttggtaatattagttatgccgacatgtctttagtgaaaccattttggctatctaat |
3381316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 15030305 - 15030237
Alignment:
| Q |
10 |
acatcatcatttgaagttagtatatgtct-ttttcagattgaaaggaataaagagcagaggcaatatgt |
77 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||||||||| ||| || |||| || | ||||||||||| |
|
|
| T |
15030305 |
acatcattatttgaagttaatatatgtcttttttcagatttaaaagagtaaaaagtaaaggcaatatgt |
15030237 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 35241045 - 35240929
Alignment:
| Q |
10 |
acatcatcatttgaagttagtatatgtctttttcagattgaaaggaataaagagcagaggca--atatgtgtggtt-ttgcagttttgagttatgtatca |
106 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| | ||||||| || ||||||| ||||| | |||||| ||||| || ||||||||| | ||||||| |
|
|
| T |
35241045 |
acatcattatttgaagttaatatatgtcttttttatattgaaaagagtaaagagaagaggtaatatatgtatggttgttacagttttgaactttgtatca |
35240946 |
T |
|
| Q |
107 |
aatgtaagcttttgagt |
123 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35240945 |
aatgtaagcttttgagt |
35240929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 15709074 - 15709118
Alignment:
| Q |
150 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaa |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15709074 |
tcagaagcacttggattcctgctgatagaaaattagtggaaaaaa |
15709118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 2303461 - 2303543
Alignment:
| Q |
205 |
atgcatccactccaaagagttctaaaatttcatgcatcaagattgaagattcaaagtaatcaaggagcatgatttggcaatat |
287 |
Q |
| |
|
||||||||||| | |||||| ||||||| ||| |||||||||||||||||||||| || | |||||||||||||||||||| |
|
|
| T |
2303461 |
atgcatccactactaagagtcctaaaatgccatttatcaagattgaagattcaaagtgattatggagcatgatttggcaatat |
2303543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 11927914 - 11927799
Alignment:
| Q |
10 |
acatcatcatttgaagttagtatatgtctttttcagattgaaaggaataaagagcagaggcaatatgtgt---ggttttgcagttttgagttatgtatca |
106 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| ||||||| ||||||| | ||||||||||| ||| | ||||| |||||| | ||||||| |
|
|
| T |
11927914 |
acatcattatttgaagttaatatatgtctttttcatattgaaaagaataaataatagaggcaatatatgtatgactgttgcaattttgaactttgtatca |
11927815 |
T |
|
| Q |
107 |
aatgtaagcttttgag |
122 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11927814 |
aatgtaagcttttgag |
11927799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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