View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_low_14 (Length: 370)
Name: NF16604_low_14
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 351
Target Start/End: Complemental strand, 55569177 - 55568838
Alignment:
| Q |
12 |
atcatcagaaggatttgcagcagcattggacacaacgacatctatctttccatacttctgtaacaggccnnnnnnnnnnntcaaacacatgttataactc |
111 |
Q |
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| T |
55569177 |
atcaacagaaggatttgcagcagcattggacacaacgacatctatctttccatacttctgtaacaggccaaaaaaaaaa-tcaaacacatgttataactc |
55569079 |
T |
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| Q |
112 |
cattcaaatagcgagaaagacagactataatatgaaagattattaaactacactgtaaaaaccaaagccaaaatcataataacaaaacatatcctccgcc |
211 |
Q |
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| T |
55569078 |
cattcaaattgcgagaaagacagactataatatgaaagattattaaactacactgaaaaaaccaaagccaaaatcataataacaaaacatatcctccgcc |
55568979 |
T |
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| Q |
212 |
aattctatttagacttgtacaaaatatgattgatgggtgttaagattccaataacatacatacatacatactgtccagctggttagaactggactcgg-a |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
55568978 |
aattctatttagacttgtacaaaatatgattgatgggtgttaagattccaataacatacatacatacatactgtccagctggttagaactggactcggca |
55568879 |
T |
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| Q |
311 |
acctcgagaggggatcaaatcccatataggatagttgtaaa |
351 |
Q |
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| T |
55568878 |
acctcgagaggggatcaaatcccatataggatagttgtaaa |
55568838 |
T |
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