View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_low_15 (Length: 347)
Name: NF16604_low_15
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 17701574 - 17701821
Alignment:
| Q |
1 |
tgtagcagtggaattgaaccgagaaaatagggtttgaagaaacaaagcgatggaaagcgtggatgtgaagcaccaaagagatcgcgcgacgtttataaag |
100 |
Q |
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| T |
17701574 |
tgtagcagtggaattgaactgagaaaatagggtttgaagaaacaaagcgatggaaagcgtggatgtgaagcaccaaacagatcgcgcgaggtttataaag |
17701673 |
T |
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| Q |
101 |
caatagcttgggttttccgaagaaatagctagggtttatcttaatttatctttctttcatcaaacttcaactttgtcaccgttggtttattttcatcact |
200 |
Q |
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| T |
17701674 |
caatagctagggttttccgaagaaatagctagggtttatcttaatttatctttctttcatcaaacttcaactttgtcaccgttggtttattttcatcact |
17701773 |
T |
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| Q |
201 |
cccttattctcatttccttgttttattctattatatttctccttttac |
248 |
Q |
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| T |
17701774 |
cccttattctcatttccttgttttattctattatatttctccttttac |
17701821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 17662509 - 17662294
Alignment:
| Q |
1 |
tgtagcagtggaattgaaccgagaaaatagggtttgaagaaacaaagcgatggaaagcgtggatgtgaagcaccaaagagatcgcgcgacgtttataaag |
100 |
Q |
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| T |
17662509 |
tgtagcagaggaattgaactgtgaaaatagggtttgaagcaacaaagcgatggaaagcgtggatgtgaagcaggaaagagaacgcgcgaggtttataaag |
17662410 |
T |
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| Q |
101 |
caatagcttggg-ttttccgaagaaatagctagggtttatcttaatttatctttctttcatcaaacttcaactttgtcaccgttggtttattttcatcac |
199 |
Q |
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| T |
17662409 |
taatagttaggacttttccgaagaaatagctagggtttatcttactttctctttctttcatcaaacttcaactttgttacctttagtttattttcatcac |
17662310 |
T |
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| Q |
200 |
tcccttattctcattt |
215 |
Q |
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| T |
17662309 |
tcccttattctcattt |
17662294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 17701834 - 17701867
Alignment:
| Q |
265 |
aataaacaatatatttttagtaaacaaatacttg |
298 |
Q |
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| T |
17701834 |
aataaacaatatatttttagtaaacaaatacttg |
17701867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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