View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_low_18 (Length: 343)
Name: NF16604_low_18
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 27720451 - 27720770
Alignment:
| Q |
20 |
gacacacgacttttggttgataaaagttggaaaaactagagccttgaaagaaaatctaatccttttcaaattattaccaagattaaaagtaaattttcac |
119 |
Q |
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| T |
27720451 |
gacacacgacttttggttgataaaagttggaaaaactagagccttgaaagaaa-tctaatccttttcaaattattacgaagattaaaagtaaatttccac |
27720549 |
T |
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| Q |
120 |
aaaagtttgttagttgacgttaatgtggttgaggttgtggtgttaaattgtaagatttgtaatatccat--tgtgtatatgggtcttcctattggaggaa |
217 |
Q |
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| T |
27720550 |
aaaagtttgttagctgacgttaatgaggttgaggttgtggtgttaaattgtaagatttttaatatccatattgtgtatatgggtcttcctattggaggaa |
27720649 |
T |
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| Q |
218 |
atgcttgtcgtttatcttttggcattgatagtatccgtaaaataatctctggctagaagagtaaaaacttgtctatggttgcttgacttgttctagtcaa |
317 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27720650 |
atgcttgtcgtttatcttttgccattgataggatccgtaaaataatctctggctagaagagtaaaaacttgtctatggttgcttgacttgttctagtcaa |
27720749 |
T |
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| Q |
318 |
acttgtcttatctctgctcct |
338 |
Q |
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||||||||||||| ||||||| |
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| T |
27720750 |
acttgtcttatctttgctcct |
27720770 |
T |
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