View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16604_low_2 (Length: 773)

Name: NF16604_low_2
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16604_low_2
NF16604_low_2
[»] scaffold0296 (1 HSPs)
scaffold0296 (15-753)||(631-1381)
[»] chr7 (10 HSPs)
chr7 (15-753)||(44584163-44584913)
chr7 (347-528)||(26906849-26907030)
chr7 (347-528)||(14231736-14231917)
chr7 (350-402)||(9141411-9141463)
chr7 (350-402)||(11642544-11642596)
chr7 (354-402)||(16375862-16375910)
chr7 (413-528)||(1264460-1264575)
chr7 (347-405)||(48844493-48844551)
chr7 (413-514)||(21713214-21713315)
chr7 (347-384)||(45823704-45823741)
[»] chr6 (3 HSPs)
chr6 (413-528)||(31891630-31891745)
chr6 (350-402)||(8560340-8560392)
chr6 (350-402)||(17905898-17905950)
[»] chr3 (10 HSPs)
chr3 (351-402)||(14604255-14604306)
chr3 (394-528)||(53025022-53025156)
chr3 (347-528)||(37984609-37984790)
chr3 (476-529)||(44703317-44703370)
chr3 (396-528)||(24759119-24759251)
chr3 (396-528)||(24826763-24826895)
chr3 (413-528)||(31687394-31687509)
chr3 (347-456)||(47399301-47399410)
chr3 (350-402)||(2702077-2702129)
chr3 (476-529)||(925482-925535)
[»] chr1 (3 HSPs)
chr1 (413-528)||(25226506-25226621)
chr1 (350-431)||(5429202-5429283)
chr1 (353-529)||(21667705-21667881)
[»] chr4 (5 HSPs)
chr4 (413-471)||(7118930-7118988)
chr4 (476-529)||(5453970-5454023)
chr4 (350-402)||(29968185-29968237)
chr4 (347-436)||(4882209-4882298)
chr4 (350-395)||(18000694-18000739)
[»] scaffold0013 (2 HSPs)
scaffold0013 (350-402)||(104593-104645)
scaffold0013 (350-400)||(127244-127294)
[»] chr8 (4 HSPs)
chr8 (350-402)||(604286-604338)
chr8 (357-402)||(1199464-1199509)
chr8 (350-402)||(44434248-44434300)
chr8 (351-402)||(44430684-44430735)
[»] scaffold0059 (1 HSPs)
scaffold0059 (350-400)||(71420-71470)
[»] scaffold1155 (1 HSPs)
scaffold1155 (350-402)||(903-955)
[»] scaffold0345 (1 HSPs)
scaffold0345 (350-402)||(9262-9314)
[»] scaffold0105 (1 HSPs)
scaffold0105 (350-402)||(29666-29718)
[»] chr5 (3 HSPs)
chr5 (350-402)||(19123117-19123169)
chr5 (478-529)||(43026812-43026863)
chr5 (352-402)||(14164629-14164679)
[»] chr2 (2 HSPs)
chr2 (443-529)||(24036781-24036867)
chr2 (350-395)||(20640222-20640267)


Alignment Details
Target: scaffold0296 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: scaffold0296
Description:

Target: scaffold0296; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 15 - 753
Target Start/End: Original strand, 631 - 1381
Alignment:
Q  15 cagagaaacccaattagatccatacttacagcaaacatttaaacattatcatcaattagtaactttagagtagatgacaatggtaatatatttacaaaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  631 cagagaaacccaattagatccatacttacagcaaacatttaaacattatcatcaattagtaactttagagtagatgacaatggtaatatatttacaaaat 730  T
Q  115 atgtagtacaattaacaaaattnnnnnnnnnnnnnnntctaagcttaccaattaatataatttttgaaatatttctttataaacaacatttgcagtc--- 211  Q
    ||||||||||||||||||||||               ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||          
T  731 atgtagtacaattaacaaaattaaaaaaaaaataaaatctaagcttaccaattaatataacttttgaaatatttctttataaacaacatttacaaaacat 830  T
Q  212 -----atatttgtatcttgactttcatcatcaattaccaatattttcaaaccctttctcgaggtaacccttgaaaacgccacatatagacgaccatgtga 306  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  831 ttacaatatttgtatcttgactttcatcatcaattaccaatattttcaaaccctttctcgaggtaacccttgaaaacgccacttatagttgaccatgtga 930  T
Q  307 gaaaactgaacgagaaagatacaaccctacatgctttaacgattgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattgcctc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  931 gaaaactgaacgagaaagatacaaccctacatgctttaacgattgcccttgacttttattaatagtcattgcaaatgaaacagtcaaaggaaattgcctc 1030  T
Q  407 ctttggaatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttcctt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1031 ctttggaatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttcctt 1130  T
Q  507 cgagaacatattttcccatctttcccat-ataaacc---ttccattgcataatcctgaagaatgatctatgtttctcaacaacatttctggcactccaac 602  Q
    |||||||||||||||||||||||   || || | ||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1131 cgagaacatattttcccatctttgtaatgatcagccgagttccattgcataatcctgaagaatgatctatgtttctcaacaacattactggcactccaac 1230  T
Q  603 ttttagtttcactatatgatttggaagtcccaaagcagtaattgtgtttagaaattctgtagtgtgcacatcatctggattatcaatatctgtattgagc 702  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1231 ttttagtttcactatatgatttggaagtcccaaagcagtaattgtgtttagaaattctgtagtgtgcacatcatctggattatcaatatctgtattgagt 1330  T
Q  703 gagtatggagcatcaaaacttagatatgttttctgatcgccaggaattaat 753  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1331 gagtatggagcatcaaaacttagatatgttttctgatcgccaggaattaat 1381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 591; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 15 - 753
Target Start/End: Complemental strand, 44584913 - 44584163
Alignment:
Q  15 cagagaaacccaattagatccatacttacagcaaacatttaaacattatcatcaattagtaactttagagtagatgacaatggtaatatatttacaaaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44584913 cagagaaacccaattagatccatacttacagcaaacatttaaacattatcatcaattagtaactttagagtagatgacaatggtaatatatttacaaaat 44584814  T
Q  115 atgtagtacaattaacaaaattnnnnnnnnnnnnnnntctaagcttaccaattaatataatttttgaaatatttctttataaacaacatttgcagtc--- 211  Q
    ||||||||||||||||||||||               ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||          
T  44584813 atgtagtacaattaacaaaattaaaaaaaaaataaaatctaagcttaccaattaatataacttttgaaatatttctttataaacaacatttacaaaacat 44584714  T
Q  212 -----atatttgtatcttgactttcatcatcaattaccaatattttcaaaccctttctcgaggtaacccttgaaaacgccacatatagacgaccatgtga 306  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  44584713 ttacaatatttgtatcttgactttcatcatcaattaccaatattttcaaaccctttctcgaggtaacccttgaaaacgccacttatagttgaccatgtga 44584614  T
Q  307 gaaaactgaacgagaaagatacaaccctacatgctttaacgattgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattgcctc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44584613 gaaaactgaacgagaaagatacaaccctacatgctttaacgattgcccttgacttttattaatagtcattgcaaatgaaacagtcaaaggaaattgcctc 44584514  T
Q  407 ctttggaatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttcctt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44584513 ctttggaatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttcctt 44584414  T
Q  507 cgagaacatattttcccatctttcccat-ataaacc---ttccattgcataatcctgaagaatgatctatgtttctcaacaacatttctggcactccaac 602  Q
    |||||||||||||||||||||||   || || | ||   ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44584413 cgagaacatattttcccatctttgtaatgatcagccgagttccattgcataatcctgaagaatgatctatgtttctcaacaacattactggcactccaac 44584314  T
Q  603 ttttagtttcactatatgatttggaagtcccaaagcagtaattgtgtttagaaattctgtagtgtgcacatcatctggattatcaatatctgtattgagc 702  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44584313 ttttagtttcactatatgatttggaagtcccaaagcagtaattgtgtttagaaattctgtagtgtgcacatcatctggattatcaatatctgtattgagt 44584214  T
Q  703 gagtatggagcatcaaaacttagatatgttttctgatcgccaggaattaat 753  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44584213 gagtatggagcatcaaaacttagatatgttttctgatcgccaggaattaat 44584163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 347 - 528
Target Start/End: Original strand, 26906849 - 26907030
Alignment:
Q  347 gattgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattgcctcctttggaatttgaaaggaattctaatatcatcaggtgtca 446  Q
    ||||| || ||||||||||| ||||||||||||||  | | ||  | |||||| || || | ||| |||||||||||||||||  |||||   |||||||    
T  26906849 gattgtccctgacttttatttatagtcattgcaaaacacaaagctataggaaactgtctgcgttgaaatttgaaaggaattctggtatcagatggtgtca 26906948  T
Q  447 atgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttccttcgagaacatattttcccatctt 528  Q
    |||| ||||| ||||| || ||||| |  |||| ||||||||||||||| ||| | ||||| | ||||||| ||||||||||    
T  26906949 atgacaatctcggtatgtagaccttctctccaacattgcttcctgatataactctcccttcaataacatatcttcccatctt 26907030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 347 - 528
Target Start/End: Complemental strand, 14231917 - 14231736
Alignment:
Q  347 gattgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattgcctcctttggaatttgaaaggaattctaatatcatcaggtgtca 446  Q
    ||||| || |||||||| || ||||||||||||||  | | ||  | |||||| || || | ||| |||||||||||||||||  |||||   |||||||    
T  14231917 gattgtccctgacttttgtttatagtcattgcaaaacacaaagctataggaaactgtctgcgttgaaatttgaaaggaattctggtatcagatggtgtca 14231818  T
Q  447 atgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttccttcgagaacatattttcccatctt 528  Q
    |||| ||||| ||||| || ||||| |  |||| ||||||||||||||| ||  | ||||| | ||||||| ||||||||||    
T  14231817 atgacaatctcggtatgtagaccttctctccaacattgcttcctgatattaccctcccttcaataacatatcttcccatctt 14231736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 9141411 - 9141463
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||||||||||||| |||||  ||||||||||||| | |||||||||||||||    
T  9141411 tgcccttgacttttgttaattatcattgcaaatgatacagtcaaaggaaattg 9141463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 11642544 - 11642596
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    ||||||||| |||| ||||| |||||||||||||| | |||||||||||||||    
T  11642544 tgcccttgaattttgttaattgtcattgcaaatgatacagtcaaaggaaattg 11642596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 402
Target Start/End: Original strand, 16375862 - 16375910
Alignment:
Q  354 cttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  16375862 cttgactttttttaattgtcattgcaaatgataaagtcaaaggaaattg 16375910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 528
Target Start/End: Complemental strand, 1264575 - 1264460
Alignment:
Q  413 aatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttccttcgagaa 512  Q
    |||||||||||||||||  |||||   ||||||||||| ||||| ||||| || ||||| |  |||| |||| |||||||||| ||  | ||||| | ||    
T  1264575 aatttgaaaggaattctggtatcagatggtgtcaatgacaatctcggtatgtagaccttctctccaacattgtttcctgatattaccctcccttcaataa 1264476  T
Q  513 catattttcccatctt 528  Q
    ||||| ||||||||||    
T  1264475 catatcttcccatctt 1264460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 347 - 405
Target Start/End: Original strand, 48844493 - 48844551
Alignment:
Q  347 gattgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattgcct 405  Q
    |||||| |||||||||| || |||||||| |||||||| || | |||||||||||||||    
T  48844493 gattgctcttgacttttgttgatagtcatcgcaaatgagattgccaaaggaaattgcct 48844551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 514
Target Start/End: Complemental strand, 21713315 - 21713214
Alignment:
Q  413 aatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttccttcgagaa 512  Q
    ||||| ||||||||||   |||||  ||||||||||||||| ||||| ||  | ||||| | |||||| ||||||| || |||||| |||||||| ||||    
T  21713315 aatttaaaaggaattcatgtatcagaaggtgtcaatgataacctaggcatccataccttatcgccaatgttgcttcatgttatcacctttccttcaagaa 21713216  T
Q  513 ca 514  Q
    ||    
T  21713215 ca 21713214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 45823741 - 45823704
Alignment:
Q  347 gattgcccttgacttttattaatagtcattgcaaatga 384  Q
    ||||||||||||||||| || |||||||||||||||||    
T  45823741 gattgcccttgacttttgttgatagtcattgcaaatga 45823704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 528
Target Start/End: Original strand, 31891630 - 31891745
Alignment:
Q  413 aatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttccttcgagaa 512  Q
    |||||||||||||||||| |||||   ||||||||||| ||||| ||||| || ||||| |  |||| ||||||||||||||| ||  | ||||| | ||    
T  31891630 aatttgaaaggaattctagtatcagatggtgtcaatgacaatctcggtatgtagaccttctctccaacattgcttcctgatattaccctcccttcaataa 31891729  T
Q  513 catattttcccatctt 528  Q
    ||||| ||||||||||    
T  31891730 catatcttcccatctt 31891745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 8560340 - 8560392
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  8560340 tgcccttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaattg 8560392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 17905898 - 17905950
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  17905898 tgcccttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaattg 17905950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 351 - 402
Target Start/End: Complemental strand, 14604306 - 14604255
Alignment:
Q  351 gcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    ||||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  14604306 gcccttgacttttattaattgtcattgcaaatgatacagtcaaaggaaattg 14604255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 528
Target Start/End: Original strand, 53025022 - 53025156
Alignment:
Q  394 aggaaattgcctcctttggaatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgat 493  Q
    ||||||||| || | ||| |||||||||||||||||  |||||   ||||||||||| ||||| ||||| || ||||| |  |||| |||||||||||||    
T  53025022 aggaaattgtctgcgttgaaatttgaaaggaattctgctatcagatggtgtcaatgacaatctcggtatgtagaccttctctccaacattgcttcctgat 53025121  T
Q  494 atcacttttccttcgagaacatattttcccatctt 528  Q
    || ||  | ||||  ||||||||| ||||||||||    
T  53025122 ataaccctccctttaagaacatatcttcccatctt 53025156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 347 - 528
Target Start/End: Complemental strand, 37984790 - 37984609
Alignment:
Q  347 gattgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattgcctcctttggaatttgaaaggaattctaatatcatcaggtgtca 446  Q
    ||||| || |||||||| || ||||||||||||||  | | ||  | |||||| || || | ||| |||||||||||||||||  |||||   |||||||    
T  37984790 gattgtccctgacttttgtttatagtcattgcaaaacacaaagctataggaaactgtctgcgttgaaatttgaaaggaattctggtatcagatggtgtca 37984691  T
Q  447 atgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttccttcgagaacatattttcccatctt 528  Q
    |||| ||||| ||||| || ||||| |  |||| ||||||||||||||| ||  | ||||| | ||||||| ||||||||||    
T  37984690 atgacaatctcggtatgtagaccttctctccaacattgcttcctgatattaccctcccttcaataacatatcttcccatctt 37984609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 476 - 529
Target Start/End: Original strand, 44703317 - 44703370
Alignment:
Q  476 ccaatattgcttcctgatatcacttttccttcgagaacatattttcccatcttt 529  Q
    |||||||||||||||| ||| ||||||||||| || ||||||||||||||||||    
T  44703317 ccaatattgcttcctgttataacttttccttcaagcacatattttcccatcttt 44703370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 396 - 528
Target Start/End: Original strand, 24759119 - 24759251
Alignment:
Q  396 gaaattgcctcctttggaatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgatat 495  Q
    |||| ||||| | ||| |||||||||||||||||  |||||   ||||||||||| ||||| ||||| || ||||| |  |||| |||||||||||||||    
T  24759119 gaaactgcctacgttgaaatttgaaaggaattctggtatcagatggtgtcaatgacaatctcggtatgtagaccttctctccaacattgcttcctgatat 24759218  T
Q  496 cacttttccttcgagaacatattttcccatctt 528  Q
     ||  | ||||  ||||||||| ||||||||||    
T  24759219 aaccctccctttaagaacatatcttcccatctt 24759251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 396 - 528
Target Start/End: Complemental strand, 24826895 - 24826763
Alignment:
Q  396 gaaattgcctcctttggaatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgatat 495  Q
    |||| ||||| | ||| |||||||||||||||||  |||||   ||||||||||| ||||| ||||| || ||||| |  |||| |||||||||||||||    
T  24826895 gaaactgcctacgttgaaatttgaaaggaattctggtatcagatggtgtcaatgacaatctcggtatgtagaccttctctccaacattgcttcctgatat 24826796  T
Q  496 cacttttccttcgagaacatattttcccatctt 528  Q
     ||  | ||||  ||||||||| ||||||||||    
T  24826795 aaccctccctttaagaacatatcttcccatctt 24826763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 413 - 528
Target Start/End: Complemental strand, 31687509 - 31687394
Alignment:
Q  413 aatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttccttcgagaa 512  Q
    |||||||||||||||||  |||||   ||||||||||| ||||| ||||| || ||||| |  |||| ||||||||||||||| ||  | ||||| | ||    
T  31687509 aatttgaaaggaattctggtatcagatggtgtcaatgacaatctcggtatgtagaccttctctccaacattgcttcctgatattaccctcccttcaataa 31687410  T
Q  513 catattttcccatctt 528  Q
    ||||| ||||||||||    
T  31687409 catatcttcccatctt 31687394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 456
Target Start/End: Original strand, 47399301 - 47399410
Alignment:
Q  347 gattgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattgcctcctttggaatttgaaaggaattctaatatcatcaggtgtca 446  Q
    ||||| ||||||||||| || ||||||| |||||| ||||| || |  ||||||||| | | ||| || ||||||||||||||| |||||  |||| |||    
T  47399301 gattggccttgacttttgtttatagtcactgcaaaagaaatggtaagtggaaattgctttcgttgaaacttgaaaggaattctagtatcagaaggtatca 47399400  T
Q  447 atgataatct 456  Q
    | ||||||||    
T  47399401 aagataatct 47399410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 2702129 - 2702077
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    ||||||||||||||  |||| |||||||||||||| | |||||||||||||||    
T  2702129 tgcccttgacttttgataattgtcattgcaaatgatacagtcaaaggaaattg 2702077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 529
Target Start/End: Complemental strand, 925535 - 925482
Alignment:
Q  476 ccaatattgcttcctgatatcacttttccttcgagaacatattttcccatcttt 529  Q
    |||||||||||||| | ||| ||||||||||| || |||||| |||||||||||    
T  925535 ccaatattgcttccagttataacttttccttcaagcacatatcttcccatcttt 925482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 528
Target Start/End: Complemental strand, 25226621 - 25226506
Alignment:
Q  413 aatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttccttcgagaa 512  Q
    |||||||||||||||||  |||||   ||||||||||| ||||||||||| || ||||| |  |||| ||||||||||||||| ||  | ||||| | ||    
T  25226621 aatttgaaaggaattctggtatcagatggtgtcaatgacaatctaggtatgtagaccttctctccaacattgcttcctgatattaccctcccttcaataa 25226522  T
Q  513 catattttcccatctt 528  Q
    ||||| ||||||||||    
T  25226521 catatcttcccatctt 25226506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 350 - 431
Target Start/End: Complemental strand, 5429283 - 5429202
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattgcctcctttggaatttgaaaggaattctaa 431  Q
    |||||||||||||| ||||| |||||||||||||| | ||||||||||||||| || | ||| || || || ||||||||||    
T  5429283 tgcccttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaattgtcttcgttgaaacttaaagggaattctaa 5429202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 353 - 529
Target Start/End: Original strand, 21667705 - 21667881
Alignment:
Q  353 ccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattgcctcctttggaatttgaaaggaattctaatatcatcaggtgtcaatgata 452  Q
    ||||| |||||||| |||||||| ||||||||||  | ||| ||||||||||  || || || ||||  || | | |  |||||  ||||| ||| ||||    
T  21667705 ccttggcttttattgatagtcatagcaaatgaaacggccaacggaaattgccgtctctgaaacttgatgggcagttttttatcagaaggtgacaaagata 21667804  T
Q  453 atctaggtatataaaccttgtggccaatattgcttcctgatatcacttttccttcgagaacatattttcccatcttt 529  Q
    | || || || |||||||| || ||||||||   ||| ||||| || |||||||| |||||||||||||||||||||    
T  21667805 acctggggatgtaaaccttttgcccaatatttgatccggatattacctttccttcaagaacatattttcccatcttt 21667881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 413 - 471
Target Start/End: Original strand, 7118930 - 7118988
Alignment:
Q  413 aatttgaaaggaattctaatatcatcaggtgtcaatgataatctaggtatataaacctt 471  Q
    ||||||||||||||||||||||||| |||  |||||||||||||| ||||||| |||||    
T  7118930 aatttgaaaggaattctaatatcataaggactcaatgataatctaagtatatagacctt 7118988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 529
Target Start/End: Complemental strand, 5454023 - 5453970
Alignment:
Q  476 ccaatattgcttcctgatatcacttttccttcgagaacatattttcccatcttt 529  Q
    |||||||||||||||| ||| ||||||||||| || |||||| |||||||||||    
T  5454023 ccaatattgcttcctgttataacttttccttcaagcacatatcttcccatcttt 5453970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 29968237 - 29968185
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||||||||||||| ||||| |||||||||||||| | |||||||| ||||||    
T  29968237 tgcccttgacttttgttaattgtcattgcaaatgatacagtcaaagaaaattg 29968185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 436
Target Start/End: Original strand, 4882209 - 4882298
Alignment:
Q  347 gattgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattgcctcctttggaatttgaaaggaattctaatatca 436  Q
    ||||| ||||||||||| || |||||||||||||| ||||  || |  ||||||||| | | ||| || ||||||||||||||| |||||    
T  4882209 gattgaccttgacttttgtttatagtcattgcaaaagaaacggtaagtggaaattgctttcgttgaaacttgaaaggaattctagtatca 4882298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 18000694 - 18000739
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaag 395  Q
    |||||||||||||| ||||| |||||||||||||| | ||||||||    
T  18000694 tgcccttgacttttcttaattgtcattgcaaatgatacagtcaaag 18000739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 104645 - 104593
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  104645 tgcccttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaattg 104593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 127294 - 127244
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaat 400  Q
    |||||||||||||| ||||| |||||||||||||| | |||||||||||||    
T  127294 tgcccttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaat 127244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 604286 - 604338
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  604286 tgcccttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaattg 604338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 1199509 - 1199464
Alignment:
Q  357 gacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    ||||||| ||||| |||||||||||||| |||||||||||||||||    
T  1199509 gacttttgttaattgtcattgcaaatgatatagtcaaaggaaattg 1199464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 44434300 - 44434248
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||||||||||||| |||||  ||||||||||||| | |||||||||||||||    
T  44434300 tgcccttgacttttgttaattttcattgcaaatgatacagtcaaaggaaattg 44434248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 402
Target Start/End: Complemental strand, 44430735 - 44430684
Alignment:
Q  351 gcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    ||||||||||||| |||||  ||||||||||||| | |||||||||||||||    
T  44430735 gcccttgacttttgttaattttcattgcaaatgatacagtcaaaggaaattg 44430684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 71420 - 71470
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaat 400  Q
    |||||||||||||| ||||| |||||||||||||| | |||||||||||||    
T  71420 tgcccttgacttttgttaattgtcattgcaaatgatacagtcaaaggaaat 71470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 903 - 955
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||| ||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  903 tgcctttgactttttttaattgtcattgcaaatgatacagtcaaaggaaattg 955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 9314 - 9262
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||| ||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  9314 tgcctttgactttttttaattgtcattgcaaatgatacagtcaaaggaaattg 9262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 29666 - 29718
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||| ||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  29666 tgcctttgactttttttaattgtcattgcaaatgatacagtcaaaggaaattg 29718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 19123169 - 19123117
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||||||||||||| ||||  |||||||||||||| | |||||||||||||||    
T  19123169 tgcccttgacttttgttaactgtcattgcaaatgatacagtcaaaggaaattg 19123117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 43026812 - 43026863
Alignment:
Q  478 aatattgcttcctgatatcacttttccttcgagaacatattttcccatcttt 529  Q
    |||||||||||||| ||| ||||||||||| || |||||| |||||||||||    
T  43026812 aatattgcttcctgttataacttttccttcaagcacatatcttcccatcttt 43026863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 352 - 402
Target Start/End: Original strand, 14164629 - 14164679
Alignment:
Q  352 cccttgacttttattaatagtcattgcaaatgaaatagtcaaaggaaattg 402  Q
    |||||||||||| ||||| |||||||||||||| | | |||||||||||||    
T  14164629 cccttgacttttgttaattgtcattgcaaatgatacattcaaaggaaattg 14164679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 443 - 529
Target Start/End: Original strand, 24036781 - 24036867
Alignment:
Q  443 gtcaatgataatctaggtatataaaccttgtggccaatattgcttcctgatatcacttttccttcgagaacatattttcccatcttt 529  Q
    |||||||||||||| |  ||||||||||| || |||||||||||| ||||||| || ||  |||| || |||||| || ||||||||    
T  24036781 gtcaatgataatcttgagatataaaccttctgaccaatattgctttctgatattacattatcttcaaggacatatctttccatcttt 24036867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 20640222 - 20640267
Alignment:
Q  350 tgcccttgacttttattaatagtcattgcaaatgaaatagtcaaag 395  Q
    |||||||||||||| ||||| |||||||||||||| | ||||||||    
T  20640222 tgcccttgacttttcttaattgtcattgcaaatgatacagtcaaag 20640267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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