View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_low_21 (Length: 323)
Name: NF16604_low_21
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 110743 - 111049
Alignment:
| Q |
1 |
cctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110743 |
cctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg |
110842 |
T |
|
| Q |
101 |
taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcgcaggaaattatcggagaataatagcg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110843 |
taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcgcaggaaattatcggagaataatagcg |
110942 |
T |
|
| Q |
201 |
attttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctacttggcttttctttagattataggatatcctattattgttttttagc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110943 |
attttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctacttggcttttctttagattataggatatcctattattgttttttagc |
111042 |
T |
|
| Q |
301 |
ttatttt |
307 |
Q |
| |
|
||||||| |
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|
| T |
111043 |
ttatttt |
111049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 48772296 - 48772453
Alignment:
| Q |
9 |
ccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg-------- |
100 |
Q |
| |
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||||||||||||||| | ||| |||||||||||||||||||||| |||||| ||| || || | || |||||||||||||||||| ||||| |
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| T |
48772296 |
ccctttgaaggaatgaagtttacatcaattgaagatgtaaagaaatactacacaaggtacgcgaggaataaaggttttagctttcgtatgggtcgtgtta |
48772395 |
T |
|
| Q |
101 |
-taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
157 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||| |
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|
| T |
48772396 |
ctaaatcaagaacggatggtagggtaattggtcaagagattctttgtttaaaggaggg |
48772453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 20647128 - 20646817
Alignment:
| Q |
1 |
cctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaag-----gttttagctttcgc |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
20647128 |
cctcagagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtatagtataggttttagctttcgc |
20647029 |
T |
|
| Q |
96 |
atgggtaaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcgcaggaaattatcggagaataa |
195 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20647028 |
atgggtaaatcaagaacaaatggtatgataattggtcaagagattgtttgttcaaaggagggattgttacaactgtgcgcaggaaattatcggaaaataa |
20646929 |
T |
|
| Q |
196 |
tagcgattttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctacttggcttttctttagattataggatatcctattattgtttt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20646928 |
tagcgattttcaacaagatcacagtcatgatgcaatggaagttacctcacattggctacttggcttttctttagattataggatatcctattattgtttt |
20646829 |
T |
|
| Q |
296 |
ttagcttatttt |
307 |
Q |
| |
|
|||||||||||| |
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|
| T |
20646828 |
ttagcttatttt |
20646817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 19328966 - 19329124
Alignment:
| Q |
8 |
gccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatgggt------ |
101 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||| ||||| ||||||| ||| ||||| || ||||||||||| || || |||||| |
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| T |
19328966 |
gccctttgaaggaattgagtttgtatcaattgaagatttaaaggattactataaaaggtatgcggggaacaaaggttttagtttccgtatgggttgtgtt |
19329065 |
T |
|
| Q |
102 |
---aaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
157 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19329066 |
actaaatcaagaacgaatggtatggtaattggtcaagagattctttgttcaaaggaggg |
19329124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 63830 - 63991
Alignment:
| Q |
5 |
agagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg---- |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||||| ||||||||||| ||||||||||| |
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|
| T |
63830 |
agagccctttgaaggaatggagtttgcatcaattgaagatgtaaaggattactacgtaaggtacgccaagaaaaaaggttttagttttcgcatgggtcgg |
63929 |
T |
|
| Q |
101 |
-----taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
157 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||| ||| |||||||||||||||| |
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|
| T |
63930 |
gttactaaatcaagaacgaatggtattgtgattggtcaagaaattctttgttcaaaggaggg |
63991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 22638868 - 22639028
Alignment:
| Q |
5 |
agagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg---- |
100 |
Q |
| |
|
|||||| | |||||||||||| ||||||||| | ||||||| ||| |||||||| ||| ||||| | || |||||||||||||||||| |||| |
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|
| T |
22638868 |
agagccgtatgaaggaatggattttgcatcattcgaagatgcaaaaaattactatacaagttatgcaaggaagaaaggttttagctttcgcttgggcgta |
22638967 |
T |
|
| Q |
101 |
----taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
157 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||| |||||||||||||||| |
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|
| T |
22638968 |
ttattaaatcaagaacaaatggattgataattggtcaggagattctttgttcaaaggaggg |
22639028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 157
Target Start/End: Original strand, 16080189 - 16080351
Alignment:
| Q |
5 |
agagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg---- |
100 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||| ||| || || | || |||||||||||||||||| ||||| |
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|
| T |
16080189 |
agagccctttgaatgaatggagtttacatcaattgaagatgtaaagaaatactacacaaggtacgcgaggaataaaggttttagctttcgtatgggtcgt |
16080288 |
T |
|
| Q |
101 |
-----taaatcaagaacaaatggtatggt-aattggtcaagagattgtttgttcaaaggaggg |
157 |
Q |
| |
|
|||||||||||| |||||| ||| |||||||||||||||| ||||||| |||||||| |
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|
| T |
16080289 |
gttactaaatcaagaacggatggtagggtaaattggtcaagagattctttgttctaaggaggg |
16080351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 38590376 - 38590228
Alignment:
| Q |
14 |
tgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatgggt---------aaa |
104 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||| |||||||||||| ||| || || | || |||||||||||||||||| ||||| ||| |
|
|
| T |
38590376 |
tgaaggaacggattttgcatcatttgaagatgcaaagaattactatacaaggtacgcaaggaacaaaggttttagctttcgcttgggtcgtattactaaa |
38590277 |
T |
|
| Q |
105 |
tcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaagg |
153 |
Q |
| |
|
||||||||| |||| || |||||||||| |||||| |||||||||||| |
|
|
| T |
38590276 |
tcaagaacagatggattgataattggtcaggagattctttgttcaaagg |
38590228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 44886212 - 44886051
Alignment:
| Q |
5 |
agagccctttgaaggaatggactttgcatcaattgaagatgtaaagaattactacgtaagatatgccaagagtaaaggttttagctttcgcatggg---- |
100 |
Q |
| |
|
||||||| ||||||||||||| ||| |||| ||||||| | ||||| ||||||| ||| || || ||| ||||||||||| || |||||||| |
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|
| T |
44886212 |
agagcccattgaaggaatggagtttaaatcatttgaagaggcaaagagttactacacaaggtacgctcagaacaaaggttttagtttccgcatgggccgt |
44886113 |
T |
|
| Q |
101 |
-----taaatcaagaacaaatggtatggtaattggtcaagagattgtttgttcaaaggaggg |
157 |
Q |
| |
|
||| ||||||||||| |||||| ||||||||||||| ||| |||||||||||||||| |
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|
| T |
44886112 |
gttactaagtcaagaacaaacggtatgataattggtcaagaaattctttgttcaaaggaggg |
44886051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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