View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_low_23 (Length: 315)
Name: NF16604_low_23
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 43 - 298
Target Start/End: Original strand, 38282483 - 38282739
Alignment:
| Q |
43 |
atattgaagtagtctatttaaaagatagtctaactgtatgtatgaagaacgtcaaatgttttaccgttaacttgtagtttaagaatgactcgaannnnnn |
142 |
Q |
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| T |
38282483 |
atattgaagtagtctatttaaaagatagtctaactgtgtgtatgaagaacgtcaaatgttttaccgttaacttgtagtttaagaatgactcgattttttt |
38282582 |
T |
|
| Q |
143 |
nnag-agatataacgttttttagagtcaagcttaagaatgacttaagtttagtttatagagatataagatattttagaggtgatatatgcatagttcaag |
241 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38282583 |
ttagtagatataacgttttttagagtcaagcttaagaatgacttaagtttagtttacagagatataagatattttagaggtgatatatgcatagttcaag |
38282682 |
T |
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| Q |
242 |
cttaagaatgactcaatttttataatagagatataacatttttcagaggtgatacat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38282683 |
cttaagaatgactcaatttttataatagagatataacatttttcagaggtgatacat |
38282739 |
T |
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