View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_low_27 (Length: 267)
Name: NF16604_low_27
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 11876261 - 11876022
Alignment:
| Q |
10 |
gcatagggtttagcaactgatcaatgtcgtcttgtaacacaaaactatggaatcaattgatgaatgaaacgtgcaaactaccgttatgagattgggtttt |
109 |
Q |
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| T |
11876261 |
gcatagggtttagcaactgatcaatgtcgtcttgtaacacaaaactatggaatcaattgatgaatgaaacgtgcaaactaccgttatgagattgggtttt |
11876162 |
T |
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| Q |
110 |
gtgatgttggataatattaataataataacttgacaacttagcatttggcaattaaaataatcttacttaaagttcaagagagagatatgagtaggttgg |
209 |
Q |
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| T |
11876161 |
gtgatgttggataatattaataataataacttgacaacttagcatttggcaattaaaataatcttacttacagttcaagagagagatatgagtaggttgg |
11876062 |
T |
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| Q |
210 |
tcgataattttctaaaatctggttttgctatgtttgaata |
249 |
Q |
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| T |
11876061 |
tcgataatgttctaaaatctggttttgctatgtttgaata |
11876022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 170
Target Start/End: Original strand, 12360975 - 12361010
Alignment:
| Q |
135 |
ataacttgacaacttagcatttggcaattaaaataa |
170 |
Q |
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| T |
12360975 |
ataacttgacaacttagcatttggcaattaaaataa |
12361010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 11886762 - 11886664
Alignment:
| Q |
26 |
ctgatcaatgtcgtcttgtaacacaaaactatggaatcaattgatgaatgaaacgtgcaaactaccgttatgagattgggttttgtgatgttggataat |
124 |
Q |
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| T |
11886762 |
ctgatcaatgtctgtttgtaacaaaaaactaaggcaccagtaaatgaatgaaacgtgcagagtaccgttatgaaatagggtttggtgctgttggataat |
11886664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 11899848 - 11899780
Alignment:
| Q |
18 |
tttagcaactgatcaatgtcgtcttgtaacacaaaactatggaatcaattgatgaatgaaacgtgcaaa |
86 |
Q |
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| T |
11899848 |
tttagcaactgatcaatgtcggtctgtaacccaaaattaaggcaccaataaatgaatgaaacgtgcaaa |
11899780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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