View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_low_3 (Length: 740)
Name: NF16604_low_3
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_3 |
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| [»] scaffold0178 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 22 - 730
Target Start/End: Original strand, 23440062 - 23440794
Alignment:
| Q |
22 |
atgctcatcactggactgaatgttgctttaatcaagttgattcgtcatatcagatttaggccctaattcttttgagttttcttgcaatttacaaataaat |
121 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23440062 |
atgctcatcactggactgaaagttgctttaatcaagttgattcgtcatatcagatttaggccctaattcttttgagttttcttgcaatttacaaataaat |
23440161 |
T |
|
| Q |
122 |
aactttgttgatgaatatcccgaatcactcgtgacgtaatttatgttgtgcccaaactaatcaaatcacataacttttctgtacaataaatttcataatt |
221 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23440162 |
aactttgttgatgaaaatcccgaatcactcgtgacgtaatttatgttgtgcccaaactaatcaaatcacataacttttctgtacaataaatttcataatt |
23440261 |
T |
|
| Q |
222 |
ttgtaactaaattgatgtataactactactataagagttatcttttagaggaatt-aattccaaaacctcatctgcttaataaatttc-----------t |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
23440262 |
ttgtaactaaattgatgtataactactactataagagttattttttagaggaattaaattccaaaacctcatctgcttaataaatttctaattatactat |
23440361 |
T |
|
| Q |
310 |
aattctctaaactatttagaggttttggtcaaacaataataaattactt--aggtttttaaatgagtacttatgaatctggatgtgttttttcaaaagat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23440362 |
aattctctaaactatttagaggttttggtcaaacaataataaattacttagaggtttttaaatgag---ttatgaatctggatgtgttttttcaaaagat |
23440458 |
T |
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| Q |
408 |
gtgttgacaacaagtgtccaacttattatagttacacttcagtaactgcctatagaacttaatttaataaatttaacggttgaatataaagttctagg-- |
505 |
Q |
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| T |
23440459 |
gtgttgacaacaagtgtccaacttattatagatacacttcagtaactacctatagaacataatttaataaatttaaccgttgaatataaagttctaggta |
23440558 |
T |
|
| Q |
506 |
----------aaatatagaacatatgctaaaacatagaatatttttcttcccaagaactaaaacatacacatatagttacacctttaataactcatc-aa |
594 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
23440559 |
aatatatcaaacatatagaacatatgctaaaacatagaatatttttcttcccaagaactaaaatatacacatatagttacacctttaataactcatcaaa |
23440658 |
T |
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| Q |
595 |
ttttactaaaacatatataccaacaaatgtctaaattgtttaaagtttttctccacatcagcgttgcacccttcttacttcggcgttccctctgtatttc |
694 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23440659 |
ttttactaaaacatatataccaacaaatgtctaaattgtttaaagtttttctccacatcagcgttgcacccttcttacttcggcgttccctctgtatttc |
23440758 |
T |
|
| Q |
695 |
cagttcgtcgtatttaccgtcgtcgttcacaggttc |
730 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
23440759 |
cagttcatcgtatttaccgtcgtcgttcacaggttc |
23440794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 641 - 730
Target Start/End: Complemental strand, 17665260 - 17665172
Alignment:
| Q |
641 |
ttttctccacatcagcgttgcacccttcttacttcggcgttccctctgtatttccagttcgtcgtatttaccgtcgtcgttcacaggttc |
730 |
Q |
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|||||||| ||||| |||||||||||||| ||||||| |||| |||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
17665260 |
ttttctccgcatcactgttgcacccttcttccttcggcattccatctgtatttccagttcgtcgta-ttaccgttgtcgttcacaggttc |
17665172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 132 - 260
Target Start/End: Complemental strand, 8589875 - 8589749
Alignment:
| Q |
132 |
atgaatatcccgaatcactcgtgacgtaatttatgttgtgcccaaactaatcaaatcacataacttttctgtacaataaatttcataattttgtaactaa |
231 |
Q |
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||||||||||||||| | | || | ||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||| |||| ||||||| |
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| T |
8589875 |
atgaatatcccgaatgattggtatcataatttatgttgtatccaaacagatcaaatcacataactttttcgtagtataaatttcag--ttttctaactaa |
8589778 |
T |
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| Q |
232 |
attgatgtataactactactataagagtt |
260 |
Q |
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||| ||||||||||||||||| ||||||| |
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| T |
8589777 |
attaatgtataactactactagaagagtt |
8589749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 601 - 635
Target Start/End: Original strand, 10485971 - 10486005
Alignment:
| Q |
601 |
taaaacatatataccaacaaatgtctaaattgttt |
635 |
Q |
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| T |
10485971 |
taaaacatatataccaacaaatgtctaaattgttt |
10486005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 601 - 635
Target Start/End: Original strand, 10460131 - 10460165
Alignment:
| Q |
601 |
taaaacatatataccaacaaatgtctaaattgttt |
635 |
Q |
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|||||||||||||||||||||||| |||||||||| |
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| T |
10460131 |
taaaacatatataccaacaaatgtttaaattgttt |
10460165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 405 - 446
Target Start/End: Complemental strand, 8589504 - 8589463
Alignment:
| Q |
405 |
gatgtgttgacaacaagtgtccaacttattatagttacactt |
446 |
Q |
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||||||||||||||||||||| |||||| |||| |||||||| |
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| T |
8589504 |
gatgtgttgacaacaagtgtcaaacttactatacttacactt |
8589463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 644 - 730
Target Start/End: Complemental strand, 19974 - 19888
Alignment:
| Q |
644 |
tctccacatcagcgttgcacccttcttacttcggcgttccctctgtatttccagttcgtcgtatttaccgtcgtcgttcacaggttc |
730 |
Q |
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||||||||||| | |||||||||| || || |||||||||| || ||||||||||||||| |||| |||||| |||||||||||| |
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| T |
19974 |
tctccacatcacctttgcaccctttttcttttagcgttccctcagtctttccagttcgtcgtctttagcgtcgttgttcacaggttc |
19888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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