View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16604_low_35 (Length: 236)

Name: NF16604_low_35
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16604_low_35
NF16604_low_35
[»] chr2 (1 HSPs)
chr2 (26-122)||(8527853-8527949)
[»] chr7 (2 HSPs)
chr7 (97-211)||(19390707-19390822)
chr7 (111-211)||(18402309-18402409)
[»] chr4 (3 HSPs)
chr4 (111-211)||(19364660-19364761)
chr4 (111-211)||(15817361-15817461)
chr4 (111-211)||(18116024-18116124)
[»] scaffold0023 (1 HSPs)
scaffold0023 (113-201)||(107260-107349)
[»] chr1 (2 HSPs)
chr1 (111-211)||(28144123-28144224)
chr1 (111-211)||(20389141-20389241)
[»] chr3 (5 HSPs)
chr3 (108-211)||(8710567-8710670)
chr3 (108-211)||(9062454-9062557)
chr3 (111-211)||(12302180-12302280)
chr3 (21-69)||(8710708-8710756)
chr3 (21-69)||(9062595-9062643)
[»] scaffold0001 (1 HSPs)
scaffold0001 (111-211)||(136614-136714)
[»] chr8 (2 HSPs)
chr8 (111-211)||(27012497-27012597)
chr8 (108-211)||(25614763-25614867)
[»] chr6 (1 HSPs)
chr6 (111-211)||(27523466-27523566)
[»] chr5 (1 HSPs)
chr5 (96-161)||(16800078-16800142)
[»] scaffold0207 (1 HSPs)
scaffold0207 (111-217)||(28337-28444)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 8527949 - 8527853
Alignment:
Q  26 caataacaacatggtaaatgaaattacctcatcgcaacttactaatattgaaaaaacactttgcaaaggtgaacccacaaattttgatattagcctt 122  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8527949 caataacaacatggtaaatgacattacctcaccgcaacttactaatattgaaaaaacacttcgcaaaggtgaacccacaaattttgatattagcctt 8527853  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 19390822 - 19390707
Alignment:
Q  97 aacccacaaattttgatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggattttta-ttagtatgatctca 195  Q
    |||||||| ||||| ||||||| |||||||| |||| ||||||| |||| | || ||||||||||||||  || ||||||||||| ||||| ||||||||    
T  19390822 aacccacacattttcatattagtcttgaagggtgttttccttttggaaaacattgaacttaatatattagtttaaaggatttttatttagtttgatctca 19390723  T
Q  196 cctcactacgacttat 211  Q
     || || |||||||||    
T  19390722 gctaaccacgacttat 19390707  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 18402409 - 18402309
Alignment:
Q  111 gatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttatt-agtatgatctcacctcactacgactt 209  Q
    |||||||| |||||||| |||||  ||||| |||||| || |||||||||| |||  |||||||||||||||| | | |||||||||||||| ||| |||    
T  18402409 gatattagtcttgaagggtgttaaacttttggaaagctttaaacttaatat-ttaaattgaaggatttttattaaatttgatctcacctcaccacggctt 18402311  T
Q  210 at 211  Q
    ||    
T  18402310 at 18402309  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 19364761 - 19364660
Alignment:
Q  111 gatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttatt-agtatgatctcacctcactacgactt 209  Q
    ||||| || ||||||||||||||||||||| |||||| || || ||||||||| |  |||||||||||||||| ||| ||||||| | |||| |||||||    
T  19364761 gatatgagtcttgaaggatgttatccttttggaaagcattaaatttaatatatcaaattgaaggatttttattaagtttgatctcgcttcaccacgactt 19364662  T
Q  210 at 211  Q
    ||    
T  19364661 at 19364660  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 15817461 - 15817361
Alignment:
Q  111 gatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttatt-agtatgatctcacctcactacgactt 209  Q
    |||||||| |||||||| |||||  ||||| |||||| || |||||||||| |||  |||||||||||||||| | | |||||||||||||| ||| |||    
T  15817461 gatattagtcttgaagggtgttaaacttttggaaagctttaaacttaatat-ttaaattgaaggatttttattaaatttgatctcacctcaccacggctt 15817363  T
Q  210 at 211  Q
    ||    
T  15817362 at 15817361  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 18116024 - 18116124
Alignment:
Q  111 gatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttatt-agtatgatctcacctcactacgactt 209  Q
    |||||||| |||||||| |||||  ||||| |||||| || |||||||||| |||  |||||||||||||||| | | |||||||||||||| ||| |||    
T  18116024 gatattagtcttgaagggtgttaaacttttggaaagctttaaacttaatat-ttaaattgaaggatttttattaaatttgatctcacctcaccacggctt 18116122  T
Q  210 at 211  Q
    ||    
T  18116123 at 18116124  T

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Target: scaffold0023 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 107260 - 107349
Alignment:
Q  113 tattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttatt-agtatgatctcacctcac 201  Q
    |||||| | |||||| || ||||||||| |||||| || ||||||||||||||  |||||||||||||||| ||| |||| |||||||||    
T  107260 tattagtcatgaagggtgctatccttttggaaagcattaaacttaatatattaaattgaaggatttttattaagtttgatatcacctcac 107349  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 28144123 - 28144224
Alignment:
Q  111 gatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttatt-agtatgatctcacctcactacgactt 209  Q
    |||||||| |||||||| |||||  ||||| |||||| || |||||||||| |||  |||||||||||||||| | | |||||||||||||| ||| |||    
T  28144123 gatattagtcttgaagggtgttaaacttttggaaagctttaaacttaatattttaatttgaaggatttttattaaatttgatctcacctcaccacggctt 28144222  T
Q  210 at 211  Q
    ||    
T  28144223 at 28144224  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 20389141 - 20389241
Alignment:
Q  111 gatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttatt-agtatgatctcacctcactacgactt 209  Q
    |||||||| |||||||| |||||  ||||| |||||| || |||||||||| |||  |||||||||||||||| | | |||||||||||||| ||| |||    
T  20389141 gatattagtcttgaagggtgttaaacttttggaaagctttaaacttaatat-ttaaattgaaggatttttattaaatttgatctcacctcaccacggctt 20389239  T
Q  210 at 211  Q
    ||    
T  20389240 at 20389241  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 8710670 - 8710567
Alignment:
Q  108 tttgatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttattagtatgatctcacctcactacgac 207  Q
    ||||||||| | || ||||| |||||||||||| |||| | || ||||||||||| ||| ||||||||||||  ||||| |||| | ||||||| || ||    
T  8710670 tttgatattggtctagaagggtgttatccttttggaaaacattaaacttaatatactattttgaaggattttatttagtttgatgttacctcaccacaac 8710571  T
Q  208 ttat 211  Q
    ||||    
T  8710570 ttat 8710567  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 9062557 - 9062454
Alignment:
Q  108 tttgatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttattagtatgatctcacctcactacgac 207  Q
    ||||||||| | || ||||| |||||||||||| |||| | || ||||||||||| ||| ||||||||||||  ||||| |||| | ||||||| || ||    
T  9062557 tttgatattggtctagaagggtgttatccttttggaaaacattaaacttaatatactattttgaaggattttatttagtttgatgttacctcaccacaac 9062458  T
Q  208 ttat 211  Q
    ||||    
T  9062457 ttat 9062454  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 12302280 - 12302180
Alignment:
Q  111 gatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttatt-agtatgatctcacctcactacgactt 209  Q
    |||||||| |||||||| |||||  ||||| |||||| || |||||||||| |||  |||||||||||||||| | | |||||||||||||| ||| |||    
T  12302280 gatattagtcttgaagggtgttaaacttttggaaagctttaaacttaatat-ttaaattgaaggatttttattaaatttgatctcacctcaccacggctt 12302182  T
Q  210 at 211  Q
    ||    
T  12302181 at 12302180  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 8710756 - 8710708
Alignment:
Q  21 caaaacaataacaacatggtaaatgaaattacctcatcgcaacttacta 69  Q
    ||||| ||||||||  ||||||||||||||||| || ||||||||||||    
T  8710756 caaaagaataacaatctggtaaatgaaattaccacaccgcaacttacta 8710708  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 9062643 - 9062595
Alignment:
Q  21 caaaacaataacaacatggtaaatgaaattacctcatcgcaacttacta 69  Q
    ||||| ||||||||  ||||||||||||||||| || ||||||||||||    
T  9062643 caaaagaataacaatctggtaaatgaaattaccacaccgcaacttacta 9062595  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 136614 - 136714
Alignment:
Q  111 gatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttatt-agtatgatctcacctcactacgactt 209  Q
    |||||||| |||||||| |||||  ||||| |||||| || |||||||||| |||  |||||||||||||||| | | |||||||||||||| ||| |||    
T  136614 gatattagtcttgaagggtgttaaacttttggaaagctttaaacttaatat-ttaaattgaaggatttttattaaatttgatctcacctcaccacggctt 136712  T
Q  210 at 211  Q
    ||    
T  136713 at 136714  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 27012497 - 27012597
Alignment:
Q  111 gatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttatt-agtatgatctcacctcactacgactt 209  Q
    |||||||| |||||||| |||||  ||||| |||||| || |||||||||| |||  |||||||||||||||| | | |||||||||||||| ||| |||    
T  27012497 gatattagtcttgaagggtgttaaacttttggaaagctttaaacttaatat-ttaaattgaaggatttttattaaatttgatctcacctcaccacggctt 27012595  T
Q  210 at 211  Q
    ||    
T  27012596 at 27012597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 25614867 - 25614763
Alignment:
Q  108 tttgatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttatt-agtatgatctcacctcactacga 206  Q
    ||||||||||| |||||||| |||||  | ||| |||||| || |||||||||| ||   |||||||||||||||| | | |||||||||||||| |||     
T  25614867 tttgatattagtcttgaagggtgttaaacatttggaaagctttaaacttaatattttgaattgaaggatttttattaaatttgatctcacctcaccacgg 25614768  T
Q  207 cttat 211  Q
    |||||    
T  25614767 cttat 25614763  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 27523466 - 27523566
Alignment:
Q  111 gatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttatt-agtatgatctcacctcactacgactt 209  Q
    |||||||| |||||||| |||||  ||||| |||||| || |||||||||| |||  |||||||||||||||| | | |||||||||||||| ||| |||    
T  27523466 gatattagtcttgaagggtgttaaacttttggaaagctttaaacttaatat-ttaaattgaaggatttttattaaatttgatctcacctcaccacggctt 27523564  T
Q  210 at 211  Q
    ||    
T  27523565 at 27523566  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 16800078 - 16800142
Alignment:
Q  96 gaacccacaaattttgatattagccttgaaggatgttatccttttagaaagcctttaacttaatat 161  Q
    |||| |||| ||||||||||||| |||||||| |||||||||||| ||||||  ||||||||||||    
T  16800078 gaacacacacattttgatattagtcttgaagggtgttatcctttt-gaaagcaattaacttaatat 16800142  T

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Target: scaffold0207 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 28444 - 28337
Alignment:
Q  111 gatattagccttgaaggatgttatccttttagaaagcctttaacttaatatattatcttgaaggatttttattag-tatgatctcacctcactacgactt 209  Q
    |||||||| |||||||| |||||  ||||| |||||| || |||||||||| ||   | |||||||||||||||  | |||||||||||||| ||| |||    
T  28444 gatattagtcttgaagggtgttaaacttttggaaagctttaaacttaatattttgaatagaaggatttttattaaatttgatctcacctcaccacggctt 28345  T
Q  210 atgcatca 217  Q
    ||| ||||    
T  28344 atgtatca 28337  T

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