View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_low_36 (Length: 229)
Name: NF16604_low_36
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_36 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43367637 - 43367408
Alignment:
| Q |
1 |
acggtagagtaataaaaaacaca--gaggcacaccatgatgcaagatcaaaggatgaagtctctcttgttgcgtattgcagcattagaacccagctacac |
98 |
Q |
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| T |
43367637 |
acggtagagtaataaaaaacacaaagaggcacaccatgctgcaagatcaaaggatgaagtctctcttgttgcgtattgcagcattagaacccagctacac |
43367538 |
T |
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| Q |
99 |
gatccactgtccactcctctcctccctcgttaaccattgtcttcaacgaattttcaaatcccccactcaccctccttatgactcggtttagaaactaact |
198 |
Q |
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| T |
43367537 |
gatccactgtccactcctctcctccctcgttaaccattgtcttcaacgaattttcaaatcccccactcaccctccttatgactcgg-ttagaaactaact |
43367439 |
T |
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| Q |
199 |
ctttctttattttcttttgtttatgtcaatt |
229 |
Q |
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| T |
43367438 |
ctttctttattttcttttgtttatgtcaatt |
43367408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6201339 - 6201114
Alignment:
| Q |
1 |
acggtagagtaataaaaaacacagaggcacaccatgatgcaagatcaaaggatgaagtctctcttgttgcgtattgcagcattagaacccagctacacga |
100 |
Q |
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||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||||| |
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| T |
6201339 |
acggtagagtaattagaaacacagaggcacacaatgatgcaagatcaaagcatgaagtctctcttgttacgtattgcatcattagaacccagctccacga |
6201240 |
T |
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| Q |
101 |
tccactgtccactcctctcctccctcgttaaccattgtcttcaacgaattttcaaatcccccactcaccctccttatgactcggtttagaaactaactct |
200 |
Q |
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| T |
6201239 |
tccactgtccattcctctcttccctccttaacaaatgtcttctacgagttttcaaattccctacccaccctccttatgactcgg-ttagaaa-taactct |
6201142 |
T |
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| Q |
201 |
ttctttattttcttttgtttatgtcaat |
228 |
Q |
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| T |
6201141 |
ttctttatttacttttgtttatgtcaat |
6201114 |
T |
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