View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_low_40 (Length: 205)
Name: NF16604_low_40
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 35263123 - 35262947
Alignment:
| Q |
16 |
acgcttcacctctctcaccatttcttcatcattatcataagatggactattctcaacatttactttctcattattcctctcagaaattccactcttttta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35263123 |
acgcttcacctctctcaccatttcttcatcattatcataagatggactattctcaacatttactttctcattattcctctcagaaattccactcttttta |
35263024 |
T |
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| Q |
116 |
tccttcccctctctcaccatcacctcatcatcaatatcataagatgaactatgctcaacattcacctcctcaacatt |
192 |
Q |
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| T |
35263023 |
tccttcccctctctcaccatctcctcatcatcattatcagaagatgaacaattctcaacatttacttcctcatcatt |
35262947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 35262996 - 35262932
Alignment:
| Q |
41 |
tcatcattatcataagatggactattctcaacatttactttctcattattcctctcagaaattcc |
105 |
Q |
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| T |
35262996 |
tcatcattatcagaagatgaacaattctcaacatttacttcctcatcattaccctcagaaattcc |
35262932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 35263149 - 35263064
Alignment:
| Q |
89 |
ttcctctcagaaattccactctttttatccttcccctctctcaccatcacctcatcatcaatatcataagatgaactatgctcaacatt |
177 |
Q |
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| T |
35263149 |
ttcctcttaaaaattccactttttttacgcttcacctctctcaccat---ttcttcatcattatcataagatggactattctcaacatt |
35263064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 16992265 - 16992363
Alignment:
| Q |
89 |
ttcctctcagaaattccactctttttatccttcccctctctcaccatcacctcatcatcaatatcataagatgaactatgctcaacattcacctcctca |
187 |
Q |
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| T |
16992265 |
ttcctctcagaaattctactttttttatccttcccctctctcaccatctcctcatcatcattatcagaagatgaactattctcaacatttacttcctca |
16992363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 16992319 - 16992383
Alignment:
| Q |
41 |
tcatcattatcataagatggactattctcaacatttactttctcattattcctctcagaaattcc |
105 |
Q |
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|||||||||||| |||||| |||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
16992319 |
tcatcattatcagaagatgaactattctcaacatttacttcctcattattactctcagaaattcc |
16992383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 16968584 - 16968664
Alignment:
| Q |
54 |
aagatggactattctcaacatttactttctcattattcctctcagaaattccactctttttatccttcccctctctcacca |
134 |
Q |
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|||||||||||||||||||||| || | |||| ||||||||||||||||||||| | | ||||| | |||||||||||| |
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| T |
16968584 |
aagatggactattctcaacattcacctcttcatcattcctctcagaaattccactttgtctatccattacctctctcacca |
16968664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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