View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16604_low_5 (Length: 560)
Name: NF16604_low_5
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 4223672 - 4223267
Alignment:
| Q |
18 |
catatctgaaaactaaaactagaactcgaccaccaaaaggaccatccgatgaaaaacaacctccagcgagtcggaaagatacataagtatggaacaccta |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4223672 |
catatctgaaaactaaaacaagaactcgagcactgaaaggaccagccgatgaaaaacaacctccagcgagtcggaaagatacataagtatggaacaccta |
4223573 |
T |
|
| Q |
118 |
tcaaaaattaacttgaatcaatgcaatgacaatcagaggaaacctaaaaatggaaaccataaagattaaaacaactaaaaccaggtcgtgaacatagagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4223572 |
tcaaaaattaacttgaatcaatgcaatgacgatcagaggaaacctaaaaatggaaaccataaagattaaaacaactaaaaccaggtcgtgaacatagagc |
4223473 |
T |
|
| Q |
218 |
taggcctaggttatgaaccacagtaacccataacgttgaagaaccatatcctaaatagtgaatcgcataacaaataagggaatccataaaaccaaccaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4223472 |
taggcctaggttatgaaccacagtaacccataacattgaagaaccatatcctaaatactgaatcgcataacacataagggaatccataaaaccaaccaca |
4223373 |
T |
|
| Q |
318 |
agaacatcgattacccatttcagaaggaaggcagatttggaaaagggtggagccattgttggccgtggcaacgtttggggtttaggggttgtacaatgga |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4223372 |
agaacatcgattacccatttcagaaggaaggcagatttggaaaagggtggagccattgttggccgtggcaacgtttggggtttaggggttgtacagtgga |
4223273 |
T |
|
| Q |
418 |
gattgt |
423 |
Q |
| |
|
|||||| |
|
|
| T |
4223272 |
gattgt |
4223267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 416 - 551
Target Start/End: Complemental strand, 4211420 - 4211285
Alignment:
| Q |
416 |
gagattgtgtgcaccaccaacggcgtaggatcacatcttgagggtaatatttgtattttgaaggatgtaagggaatgacatggtcggaggtggttgtagg |
515 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4211420 |
gagattgtgtgcaccgccgacggcgtaagatcacatcttgagggtaatatttgtattttgaaggatgtaagggaatgacatgatcggaggtggttgtagg |
4211321 |
T |
|
| Q |
516 |
atcttatctctctaaggttaaaaatcaacttcatct |
551 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4211320 |
atcttctctctctaaggttaaaaatcaacttcatct |
4211285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University