View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16604_low_6 (Length: 556)
Name: NF16604_low_6
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16604_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 13 - 537
Target Start/End: Complemental strand, 55569362 - 55568838
Alignment:
| Q |
13 |
acatcatcacactacacaaagatggaagaaagggaaaacactgaaacgtatatattggattatttcttttcttttatttgttaaagccattttcaaagct |
112 |
Q |
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| T |
55569362 |
acatcaacacactacacaaagatggaagaaagggaaaacactgaaacgtatatattggattatttcttttcttttatttgttaaagccattttcaaagct |
55569263 |
T |
|
| Q |
113 |
tagttacctttagaagaagtatagtggctttgacatttatctcccataacttgtcaaggaccgaatcttgggtttgcagaatggaatcaacagaaggatt |
212 |
Q |
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| T |
55569262 |
tagtaacctttagaagaagtatagtggctttgacatttatctcccataacttgtcaaggaccgaatcttgggtttgcagaatggaatcaacagaaggatt |
55569163 |
T |
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| Q |
213 |
tgcagcagcattggacacaacgacatctatctttccatacttctgtaacaggccnnnnnnnnnnntcaaacacatgttataactccattcaaatagcgag |
312 |
Q |
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| T |
55569162 |
tgcagcagcattggacacaacgacatctatctttccatacttctgtaacaggcc-aaaaaaaaaatcaaacacatgttataactccattcaaattgcgag |
55569064 |
T |
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| Q |
313 |
aaagacagactataatatgaaagattattaaactacactgtaaaaaccaaagccaaaatcataataacaaaacatatcctccgccaattctatttagact |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55569063 |
aaagacagactataatatgaaagattattaaactacactgaaaaaaccaaagccaaaatcataataacaaaacatatcctccgccaattctatttagact |
55568964 |
T |
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| Q |
413 |
tgtacaaaatatgattgatgggtgttaagattccaataacatacatacatacatactgtccagctggttagaactggactcgg-aacctcgagaggggat |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55568963 |
tgtacaaaatatgattgatgggtgttaagattccaataacatacatacatacatactgtccagctggttagaactggactcggcaacctcgagaggggat |
55568864 |
T |
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| Q |
512 |
caaatcccatataggatagttgtaaa |
537 |
Q |
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| T |
55568863 |
caaatcccatataggatagttgtaaa |
55568838 |
T |
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