View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16604_low_8 (Length: 472)

Name: NF16604_low_8
Description: NF16604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16604_low_8
NF16604_low_8
[»] chr7 (40 HSPs)
chr7 (218-329)||(19276009-19276120)
chr7 (106-214)||(7460572-7460680)
chr7 (102-202)||(22566300-22566400)
chr7 (101-176)||(17813972-17814047)
chr7 (18-102)||(27456691-27456776)
chr7 (101-214)||(36469838-36469950)
chr7 (106-214)||(48462096-48462205)
chr7 (18-92)||(47646405-47646480)
chr7 (18-102)||(524502-524587)
chr7 (103-176)||(24188211-24188284)
chr7 (18-102)||(2734688-2734774)
chr7 (106-176)||(7460883-7460953)
chr7 (18-76)||(33435345-33435403)
chr7 (106-214)||(34535695-34535800)
chr7 (18-94)||(16535390-16535467)
chr7 (18-94)||(16630195-16630272)
chr7 (101-214)||(24185665-24185777)
chr7 (24-91)||(48643156-48643223)
chr7 (18-77)||(6879757-6879816)
chr7 (18-100)||(11399485-11399568)
chr7 (106-209)||(34535992-34536095)
chr7 (18-102)||(29211251-29211334)
chr7 (18-102)||(43202778-43202863)
chr7 (105-214)||(48461793-48461901)
chr7 (106-170)||(10017941-10018005)
chr7 (126-209)||(6376387-6376470)
chr7 (18-77)||(7697655-7697714)
chr7 (422-457)||(19275882-19275917)
chr7 (18-91)||(20334956-20335030)
chr7 (33-102)||(40849237-40849307)
chr7 (106-176)||(43511192-43511262)
chr7 (18-77)||(1812843-1812902)
chr7 (18-77)||(21237431-21237490)
chr7 (18-77)||(23410878-23410937)
chr7 (19-77)||(23033045-23033103)
chr7 (22-76)||(36550832-36550886)
chr7 (30-94)||(30855471-30855536)
chr7 (18-55)||(32238033-32238070)
chr7 (30-59)||(38879564-38879593)
chr7 (106-170)||(6376707-6376771)
[»] scaffold0548 (1 HSPs)
scaffold0548 (101-214)||(3335-3448)
[»] chr4 (55 HSPs)
chr4 (101-214)||(11306557-11306670)
chr4 (105-214)||(45505363-45505472)
chr4 (101-214)||(49984102-49984215)
chr4 (102-210)||(17524511-17524619)
chr4 (98-214)||(48845705-48845821)
chr4 (101-202)||(17524200-17524301)
chr4 (105-214)||(46397306-46397415)
chr4 (106-214)||(4416781-4416889)
chr4 (98-214)||(18414990-18415106)
chr4 (103-214)||(4416474-4416585)
chr4 (18-99)||(48338707-48338789)
chr4 (105-214)||(43913394-43913503)
chr4 (108-208)||(12292892-12292992)
chr4 (104-176)||(37724737-37724809)
chr4 (103-211)||(49983791-49983899)
chr4 (108-211)||(4592662-4592765)
chr4 (18-94)||(32222956-32223031)
chr4 (105-210)||(48846021-48846126)
chr4 (102-214)||(45505056-45505168)
chr4 (104-167)||(5665794-5665857)
chr4 (20-70)||(5122048-5122098)
chr4 (19-76)||(3666730-3666787)
chr4 (104-213)||(20870799-20870906)
chr4 (101-170)||(31143746-31143815)
chr4 (19-94)||(46471791-46471867)
chr4 (106-170)||(52485343-52485407)
chr4 (18-77)||(18536320-18536379)
chr4 (102-212)||(48658338-48658448)
chr4 (105-170)||(52485689-52485755)
chr4 (101-214)||(20269168-20269281)
chr4 (14-74)||(7763762-7763822)
chr4 (119-211)||(18414736-18414828)
chr4 (102-202)||(31141676-31141776)
chr4 (102-214)||(37724436-37724548)
chr4 (18-77)||(20986763-20986822)
chr4 (18-77)||(29233113-29233172)
chr4 (18-91)||(14867130-14867204)
chr4 (18-94)||(4689044-4689121)
chr4 (18-94)||(6102251-6102327)
chr4 (18-102)||(41312306-41312391)
chr4 (125-209)||(54702298-54702383)
chr4 (18-74)||(18399387-18399443)
chr4 (106-214)||(36752860-36752968)
chr4 (18-70)||(41325759-41325811)
chr4 (102-170)||(45170863-45170931)
chr4 (105-176)||(24671952-24672023)
chr4 (19-70)||(7783854-7783907)
chr4 (30-76)||(8312258-8312304)
chr4 (33-102)||(36106104-36106174)
chr4 (18-55)||(41260472-41260509)
chr4 (18-59)||(51907415-51907456)
chr4 (105-165)||(20268894-20268954)
chr4 (33-77)||(29701012-29701056)
chr4 (23-75)||(35232958-35233010)
chr4 (33-77)||(48685130-48685174)
[»] chr1 (54 HSPs)
chr1 (100-211)||(8718503-8718614)
chr1 (103-214)||(31872903-31873013)
chr1 (97-212)||(42604622-42604737)
chr1 (105-214)||(37245637-37245746)
chr1 (100-214)||(33459890-33460004)
chr1 (106-203)||(33460200-33460297)
chr1 (100-214)||(35795308-35795422)
chr1 (105-211)||(48171743-48171849)
chr1 (105-193)||(48171442-48171530)
chr1 (98-212)||(42604935-42605049)
chr1 (101-214)||(19987330-19987443)
chr1 (18-100)||(36203085-36203168)
chr1 (101-211)||(34517960-34518070)
chr1 (105-211)||(35795623-35795729)
chr1 (105-214)||(143117-143226)
chr1 (117-214)||(34518258-34518355)
chr1 (18-102)||(35979909-35979993)
chr1 (19-94)||(9330763-9330839)
chr1 (101-212)||(3072974-3073085)
chr1 (105-202)||(142811-142908)
chr1 (105-202)||(22792290-22792387)
chr1 (19-94)||(18834203-18834279)
chr1 (18-77)||(40094826-40094885)
chr1 (106-176)||(18519631-18519701)
chr1 (106-176)||(31872709-31872779)
chr1 (103-214)||(6043446-6043554)
chr1 (18-59)||(9249768-9249809)
chr1 (18-102)||(17989408-17989493)
chr1 (105-214)||(19987637-19987746)
chr1 (18-102)||(35992232-35992316)
chr1 (106-214)||(22792581-22792689)
chr1 (18-77)||(6248437-6248496)
chr1 (18-77)||(26344708-26344767)
chr1 (101-151)||(8718403-8718453)
chr1 (103-209)||(18519315-18519421)
chr1 (18-94)||(23474744-23474822)
chr1 (32-74)||(35375545-35375587)
chr1 (18-91)||(52380379-52380453)
chr1 (125-170)||(14419840-14419885)
chr1 (18-77)||(6693763-6693820)
chr1 (18-70)||(8269009-8269061)
chr1 (18-74)||(18310330-18310386)
chr1 (103-151)||(37245935-37245983)
chr1 (20-91)||(50471464-50471536)
chr1 (101-176)||(25622604-25622679)
chr1 (106-169)||(39380741-39380804)
chr1 (18-94)||(13056177-13056255)
chr1 (35-69)||(14099881-14099915)
chr1 (33-94)||(21685194-21685256)
chr1 (129-170)||(13189177-13189218)
chr1 (105-214)||(14420083-14420192)
chr1 (35-76)||(25507257-25507298)
chr1 (18-55)||(39166882-39166919)
chr1 (30-74)||(36782033-36782077)
[»] chr6 (31 HSPs)
chr6 (103-205)||(22793299-22793401)
chr6 (102-214)||(6611941-6612053)
chr6 (117-213)||(29674860-29674956)
chr6 (13-102)||(891977-892067)
chr6 (105-211)||(34829862-34829968)
chr6 (106-184)||(22793601-22793679)
chr6 (18-102)||(32190317-32190402)
chr6 (98-214)||(17342881-17342997)
chr6 (103-214)||(10567765-10567875)
chr6 (101-208)||(28705819-28705926)
chr6 (117-211)||(10567475-10567569)
chr6 (130-211)||(6611636-6611717)
chr6 (18-94)||(12108222-12108298)
chr6 (18-102)||(19134738-19134822)
chr6 (18-77)||(16971415-16971474)
chr6 (18-77)||(29048910-29048968)
chr6 (100-170)||(11122248-11122318)
chr6 (18-77)||(9686412-9686471)
chr6 (18-77)||(13092360-13092419)
chr6 (33-94)||(4563242-4563304)
chr6 (19-77)||(8064853-8064910)
chr6 (142-176)||(11121935-11121969)
chr6 (126-168)||(19278981-19279023)
chr6 (106-212)||(28613472-28613578)
chr6 (18-59)||(28633307-28633348)
chr6 (141-214)||(29674913-29674986)
chr6 (101-150)||(32629059-32629108)
chr6 (18-77)||(4577454-4577514)
chr6 (122-170)||(6210297-6210345)
chr6 (108-168)||(6273620-6273680)
chr6 (18-77)||(7169741-7169801)
[»] chr8 (38 HSPs)
chr8 (103-212)||(4623406-4623515)
chr8 (105-214)||(9710216-9710325)
chr8 (103-176)||(18429440-18429513)
chr8 (101-213)||(7644776-7644887)
chr8 (96-214)||(34439213-34439331)
chr8 (109-213)||(18935353-18935457)
chr8 (102-214)||(34439527-34439639)
chr8 (106-214)||(34687755-34687863)
chr8 (105-214)||(4623069-4623178)
chr8 (106-214)||(7535557-7535665)
chr8 (106-214)||(16049783-16049889)
chr8 (102-211)||(18935050-18935159)
chr8 (100-214)||(7645087-7645201)
chr8 (102-214)||(18429627-18429738)
chr8 (106-214)||(18548539-18548647)
chr8 (18-77)||(1271497-1271556)
chr8 (20-94)||(27674885-27674960)
chr8 (98-208)||(25879561-25879670)
chr8 (18-93)||(12073863-12073939)
chr8 (18-69)||(9012503-9012554)
chr8 (18-77)||(12659930-12659988)
chr8 (18-77)||(28441833-28441892)
chr8 (103-214)||(32665851-32665961)
chr8 (97-151)||(7535292-7535346)
chr8 (106-191)||(3016008-3016093)
chr8 (31-94)||(28801950-28802014)
chr8 (18-77)||(15452326-15452385)
chr8 (31-74)||(40436814-40436857)
chr8 (19-91)||(12193107-12193178)
chr8 (19-91)||(12437535-12437606)
chr8 (18-76)||(18754985-18755043)
chr8 (36-74)||(30942942-30942980)
chr8 (19-77)||(41346275-41346333)
chr8 (105-214)||(16049480-16049589)
chr8 (129-170)||(18548881-18548922)
chr8 (105-170)||(21445985-21446050)
chr8 (18-70)||(24681754-24681807)
chr8 (24-77)||(31477852-31477905)
[»] chr3 (31 HSPs)
chr3 (102-210)||(33419849-33419957)
chr3 (105-214)||(33241846-33241955)
chr3 (20-94)||(21562917-21562992)
chr3 (18-94)||(2832027-2832104)
chr3 (18-91)||(51660646-51660720)
chr3 (19-76)||(4280652-4280709)
chr3 (97-176)||(54341438-54341517)
chr3 (18-75)||(26758593-26758650)
chr3 (103-212)||(37285546-37285655)
chr3 (127-176)||(37285889-37285938)
chr3 (24-77)||(38651689-38651742)
chr3 (24-77)||(44651332-44651385)
chr3 (106-214)||(54341204-54341312)
chr3 (126-214)||(30548035-30548125)
chr3 (18-77)||(55467302-55467361)
chr3 (103-213)||(30547738-30547846)
chr3 (102-160)||(48618839-48618897)
chr3 (101-214)||(51388062-51388176)
chr3 (18-76)||(54122686-54122744)
chr3 (18-55)||(4764071-4764108)
chr3 (18-59)||(20846838-20846879)
chr3 (98-211)||(48618473-48618586)
chr3 (33-77)||(37045690-37045734)
chr3 (132-211)||(19540851-19540930)
chr3 (103-150)||(19541201-19541248)
chr3 (18-77)||(22472724-22472783)
chr3 (33-86)||(52632509-52632563)
chr3 (109-170)||(39639876-39639937)
chr3 (133-210)||(40484937-40485013)
chr3 (154-214)||(33419589-33419649)
chr3 (33-77)||(50578658-50578702)
[»] chr5 (25 HSPs)
chr5 (101-211)||(33992331-33992441)
chr5 (19-94)||(18432454-18432530)
chr5 (99-211)||(33992642-33992754)
chr5 (18-77)||(42920698-42920757)
chr5 (18-94)||(41805466-41805543)
chr5 (31-102)||(6633680-6633752)
chr5 (102-214)||(19935431-19935542)
chr5 (106-214)||(25508108-25508216)
chr5 (101-168)||(16642746-16642813)
chr5 (18-77)||(22553721-22553780)
chr5 (18-76)||(38147475-38147533)
chr5 (23-77)||(41455242-41455296)
chr5 (106-169)||(19328409-19328472)
chr5 (18-94)||(23418332-23418409)
chr5 (102-214)||(18697489-18697601)
chr5 (18-58)||(31075299-31075339)
chr5 (21-77)||(36568081-36568137)
chr5 (106-140)||(11130557-11130591)
chr5 (106-176)||(16643058-16643128)
chr5 (33-94)||(35727350-35727412)
chr5 (24-77)||(11402967-11403020)
chr5 (23-102)||(2423178-2423257)
chr5 (33-77)||(8541987-8542030)
chr5 (129-209)||(32291103-32291183)
chr5 (19-55)||(32721088-32721124)
[»] chr2 (47 HSPs)
chr2 (100-214)||(13490169-13490283)
chr2 (107-214)||(13490476-13490583)
chr2 (91-214)||(15988553-15988675)
chr2 (102-193)||(26845506-26845597)
chr2 (99-170)||(32622212-32622283)
chr2 (99-202)||(39060302-39060405)
chr2 (112-214)||(27957024-27957126)
chr2 (91-212)||(3217271-3217392)
chr2 (102-214)||(27956722-27956834)
chr2 (103-211)||(43971820-43971928)
chr2 (104-214)||(29526897-29527007)
chr2 (103-212)||(1352830-1352939)
chr2 (106-211)||(6795478-6795583)
chr2 (97-214)||(32622492-32622609)
chr2 (106-170)||(24015813-24015876)
chr2 (102-214)||(44995363-44995474)
chr2 (103-214)||(13140288-13140399)
chr2 (30-91)||(13194280-13194342)
chr2 (100-214)||(29526591-29526704)
chr2 (18-94)||(15320232-15320309)
chr2 (19-94)||(31719722-31719798)
chr2 (109-169)||(37762355-37762415)
chr2 (18-77)||(22014324-22014382)
chr2 (117-208)||(38262841-38262932)
chr2 (106-176)||(1353144-1353214)
chr2 (102-184)||(14473503-14473585)
chr2 (20-77)||(27898698-27898756)
chr2 (101-170)||(3217502-3217571)
chr2 (103-176)||(13140604-13140677)
chr2 (18-59)||(17763110-17763151)
chr2 (128-209)||(24284108-24284189)
chr2 (18-94)||(41166518-41166595)
chr2 (103-160)||(43513916-43513973)
chr2 (103-151)||(14424237-14424285)
chr2 (103-214)||(6412463-6412573)
chr2 (30-77)||(10242410-10242457)
chr2 (18-73)||(34572612-34572667)
chr2 (30-100)||(36500264-36500335)
chr2 (20-55)||(36964352-36964387)
chr2 (33-102)||(12041225-12041295)
chr2 (102-144)||(43971650-43971692)
chr2 (117-170)||(6795193-6795246)
chr2 (125-170)||(14473877-14473922)
chr2 (22-94)||(27301134-27301207)
chr2 (34-74)||(11678377-11678417)
chr2 (34-74)||(11695855-11695895)
chr2 (31-59)||(44085866-44085894)
[»] scaffold0204 (2 HSPs)
scaffold0204 (18-99)||(26229-26311)
scaffold0204 (19-59)||(14889-14929)
[»] scaffold0400 (2 HSPs)
scaffold0400 (104-176)||(9914-9986)
scaffold0400 (102-193)||(9576-9667)
[»] scaffold0365 (2 HSPs)
scaffold0365 (104-176)||(10557-10629)
scaffold0365 (102-193)||(10219-10310)
[»] scaffold0056 (2 HSPs)
scaffold0056 (101-214)||(62722-62835)
scaffold0056 (103-214)||(63027-63138)
[»] scaffold0045 (1 HSPs)
scaffold0045 (102-169)||(29607-29674)
[»] scaffold0015 (2 HSPs)
scaffold0015 (97-176)||(47417-47496)
scaffold0015 (106-160)||(47291-47345)
[»] scaffold0664 (1 HSPs)
scaffold0664 (18-94)||(6345-6422)
[»] scaffold0001 (1 HSPs)
scaffold0001 (18-94)||(428009-428086)
[»] scaffold0688 (4 HSPs)
scaffold0688 (18-70)||(1537-1589)
scaffold0688 (18-70)||(8106-8158)
scaffold0688 (18-70)||(3131-3182)
scaffold0688 (18-70)||(4798-4849)
[»] scaffold0210 (2 HSPs)
scaffold0210 (18-109)||(20259-20351)
scaffold0210 (18-109)||(28151-28243)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 19276120 - 19276009
Alignment:
Q  218 gatagtctctaaaagttttgtaaaatggagaagtggaaaattagtaattaaaggctcatattttgcattttaaatctttccatgagcggatcataatttc 317  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||||| |||||||||||||    
T  19276120 gataggctctaaaagttttataaaatggagaagtggaaaattagtaattaaaaggtcagtttttgcattttaaatctttccatgagtggatcataatttc 19276021  T
Q  318 gtaagatgggta 329  Q
    ||||||||||||    
T  19276020 gtaagatgggta 19276009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 7460572 - 7460680
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    |||||| ||| ||||||| |||||||||||||||| ||||||||||||||||||| ||||||||  ||||| || |||||||| |||| |||| ||| ||    
T  7460572 ttaatttcatgtttgatcccttatgtttattttagttttcaagttgatcccttatgttttaaaaatttcaagttggtcccttacgttttaaaaatttcaa 7460671  T
Q  206 gttggtcca 214  Q
    |||||||||    
T  7460672 gttggtcca 7460680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 22566300 - 22566400
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| ||||||| |||||||||||||||| ||| || ||| |||||||| ||||||||| ||||| || |||||||| |||| |||||||    
T  22566300 aggcttaattgcatgtttgatcccttatgtttattttagtttttaaattggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtt 22566399  T
Q  202 t 202  Q
    |    
T  22566400 t 22566400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 17813972 - 17814047
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||    
T  17813972 aaggcttaattccatgtttgatctcttatgtttattttaggtttcaagttggtctcttatgttttaaaagtttcaa 17814047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 27456691 - 27456776
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    ||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||| |||| ||||| |||||||    
T  27456691 gaaacttaacaagagaaaaaatatgtcattttacaaaagttttcattgagtttctatgagtattggtctaggagacatagatttaa 27456776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 36469950 - 36469838
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||| |  | ||||||||| || || || |||||||| |||| ||||||    
T  36469950 aaggcttaattgcatgtttgatctcttatgtttatttta-gtttcaaattggtccttcgtgttttaaaagttttaagttggtcccttacgttttaaaagt 36469852  T
Q  201 tttaagttggtcca 214  Q
    || |||||||||||    
T  36469851 ttcaagttggtcca 36469838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 48462205 - 48462096
Alignment:
Q  106 ttaattgcatatttgatctcttatgttt-attttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    |||||| ||| ||||||||||||||||| ||||||| ||| |||||| |||||||| ||||||||| ||||| || |||  |||||||| ||||||||||    
T  48462205 ttaattacatgtttgatctcttatgttttattttagtttttaagttggtcccttatgttttaaaagtttcaagttggtcatttatgttttaaaagtttta 48462106  T
Q  205 agttggtcca 214  Q
    ||||| ||||    
T  48462105 agttgatcca 48462096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 47646480 - 47646405
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgac 92  Q
    ||||||||||| |||||||||||||||||||||| ||| ||| ||||||||||||||||| |||||| ||||||||    
T  47646480 gaaacttaacaagagaaaaaatatgtcattttattaaaatttccatcgagtttctatgagtattggtctaggtgac 47646405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 524587 - 524502
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    |||||||||||  ||||||||||||| ||||||||||||||| ||| ||||||||||||| | |||| |||||||||| |||||||    
T  524587 gaaacttaacaatagaaaaaatatgttattttataaaagtttccattgagtttctatgagtactggtctaggtgacatagatttaa 524502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 24188284 - 24188211
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||| |||||| || |||||    
T  24188284 ggcttaattgcatgtttgatcgcttatgtttatattaggtttcaagttggtcccttatgttttaagagtttcaa 24188211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 2734688 - 2734774
Alignment:
Q  18 gaaacttaacatgagaaaa-aatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    ||||||||||| ||||||| ||||||||||||||||||||| | ||| ||||||||||||| |||||| ||| |||||| |||||||    
T  2734688 gaaacttaacaagagaaaaaaatatgtcattttataaaagtattcattgagtttctatgagtattggtctagatgacatagatttaa 2734774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 7460953 - 7460883
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    |||||||||| ||||||| |||||||||||||||| |||||||||| || ||||| ||||||||| |||||    
T  7460953 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcacttatgttttaaaagtttcaa 7460883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 33435345 - 33435403
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatga 76  Q
    ||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||    
T  33435345 gaaacttaacaagagaaaaaacatgtcattttataaaagttcacattgagtttctatga 33435403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 34535695 - 34535800
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    |||||||||| ||||||| |||||||||||||||| ||| |||||| ||   | | ||||||||| |||||  | |||||||| |||| |||||||||||    
T  34535695 ttaattgcatgtttgatcccttatgtttattttagtttttaagttggtc---tctgttttaaaagtttcaagctggtcccttacgttttaaaagttttaa 34535791  T
Q  206 gttggtcca 214  Q
    |||||||||    
T  34535792 gttggtcca 34535800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 16535467 - 16535390
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    |||||||| || ||||||||||||||||||||| |||||||| ||| |||||||||| || |||||| ||||||||||    
T  16535467 gaaacttatcaagagaaaaaatatgtcattttaaaaaagtttccattgagtttctataagtattggtctaggtgacat 16535390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 16630195 - 16630272
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    |||||||| || ||||||||||||||||||||| |||||||| ||| |||||||||| || |||||| ||||||||||    
T  16630195 gaaacttatcaagagaaaaaatatgtcattttaaaaaagtttccattgagtttctataagtattggtctaggtgacat 16630272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 24185665 - 24185777
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    |||| |||||||||| |||| || ||  ||||||||||||||||||||||| ||| |||| ||||||||| || || || ||| ||||||||| ||| ||    
T  24185665 aaggtttaattgcatgtttggtcactcgtgtttattttaggtttcaagttggtcctttatgttttaaaagttttaa-ttggtcacttatgttttaaaggt 24185763  T
Q  201 tttaagttggtcca 214  Q
    || |||||||||||    
T  24185764 ttcaagttggtcca 24185777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 48643156 - 48643223
Alignment:
Q  24 taacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtga 91  Q
    ||||| |||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||||    
T  48643156 taacaagagaaaaaatatgtcattttat-aaagttttcattgagtttctatgagtattggtataggtga 48643223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 6879816 - 6879757
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| |||||||||||||||||||||| ||||||| ||| ||| |||||||||    
T  6879816 gaaacttaacaagagaaaaaatatgtcattttattaaagttttcattgagcttctatgag 6879757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 11399485 - 11399568
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatga-gattggtataggtgacattgattt 100  Q
    ||||||||||| |||| ||||||||||||||||||||||||| ||| || |||||| ||  |||||| |||||||||| |||||    
T  11399485 gaaacttaacaagagacaaaatatgtcattttataaaagtttccattgaatttctaagattattggtctaggtgacatagattt 11399568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 34536095 - 34535992
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    |||||||||| ||||||| ||||||||||| |||| ||| |||||| ||||||| |||||||||| || || || ||| |||| |||| | |||||| ||    
T  34536095 ttaattgcatgtttgatcccttatgtttatcttagtttttaagttggtcccttacattttaaaagttttaagttggtctcttacgttttagaagtttcaa 34535996  T
Q  206 gttg 209  Q
    ||||    
T  34535995 gttg 34535992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 29211334 - 29211251
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatg-agattggtataggtgacattgatttaa 102  Q
    ||||||||||| |||||| |||||  |||||||||||||||| ||| ||||||||||| | |||||| |||||||||| |||||||    
T  29211334 gaaacttaacaagagaaacaatat--cattttataaaagttttcattgagtttctatgaatattggtctaggtgacatagatttaa 29211251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 43202778 - 43202863
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    ||||||||||| |||||||||||||| ||| ||||||||||| ||| |||||| || ||| |||||| ||| |||||| |||||||    
T  43202778 gaaacttaacaagagaaaaaatatgttattatataaaagttttcattgagtttatacgagtattggtctagatgacatagatttaa 43202863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 48461793 - 48461901
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| || |||||||||||||| |||||| ||| |||||||||| |||| ||||||||| || || || ||| |||| |||| |||||| | |    
T  48461793 cttaattgcatgtt-gatctcttatgtttgttttagtttttaagttgatcctttatgttttaaaagttttaagttggtctcttacgttttaaaagtatga 48461891  T
Q  205 agttggtcca 214  Q
    ||||| ||||    
T  48461892 agttgatcca 48461901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 10018005 - 10017941
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    ||||||| || |||| ||||||||||||||||||||||| |||||| || ||||| |||||||||    
T  10018005 ttaattgtatgtttggtctcttatgtttattttaggttttaagttggtctcttatgttttaaaag 10017941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 6376387 - 6376470
Alignment:
Q  126 ttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttg 209  Q
    ||||||||||||||||||| |||||| | | |||| ||||||||| || || || |||||||| |||| |||||||| ||||||    
T  6376387 ttatgtttattttaggttttaagttggttctttatgttttaaaagttttaagttggtcccttaggttttaaaagtttcaagttg 6376470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 7697655 - 7697714
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||||||||  |||||||||||||| |||||| ||||||| ||| |||||||||||||    
T  7697655 gaaacttaacaatagaaaaaatatgtctttttattaaagttttcattgagtttctatgag 7697714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 422 - 457
Target Start/End: Complemental strand, 19275917 - 19275882
Alignment:
Q  422 acccatgacatatttcagcaagataaacgacatttt 457  Q
    ||||||||||||||||||||||||||||||||||||    
T  19275917 acccatgacatatttcagcaagataaacgacatttt 19275882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 20334956 - 20335030
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtga 91  Q
    ||||| ||||| |||||||||||||||| ||||| ||||||| ||| || |||||||||| |||||| |||||||    
T  20334956 gaaacataacaagagaaaaaatatgtcaatttattaaagttttcattgaatttctatgagtattggtctaggtga 20335030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 40849237 - 40849307
Alignment:
Q  33 aaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    |||||||||||| |||||||||||||| ||| ||||||||||||| |||||| | | |||||| |||||||    
T  40849237 aaaaaatatgtcgttttataaaagtttccattgagtttctatgagtattggtctcgatgacatagatttaa 40849307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 43511262 - 43511192
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    ||||||| || ||||||||||||||||||||||| |||| ||| |||||  |||| ||||||||| |||||    
T  43511262 ttaattgtatgtttgatctcttatgtttattttaagttttaagatgatcttttatgttttaaaagtttcaa 43511192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 1812843 - 1812902
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||| |||| |||||||||||||||||||||| ||| ||| ||| || ||||||||||    
T  1812843 gaaactcaacaagagaaaaaatatgtcattttattaaaattttcattgaatttctatgag 1812902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 21237490 - 21237431
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||||||||  || ||| |||||||||||||||||||||| ||| || ||||||||||    
T  21237490 gaaacttaacaaaaggaaatatatgtcattttataaaagtttccattgaatttctatgag 21237431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 23410937 - 23410878
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| |||||||||||| |||||||||| |||||   || |||||||||||||    
T  23410937 gaaacttaacaagagaaaaaatatttcattttatagaagttcttattgagtttctatgag 23410878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 23033045 - 23033103
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||||||| |||||||||||| ||||||| ||| ||||| | | |||||||||||||    
T  23033045 aaacttaacaagagaaaaaatatttcattttgtaagagtttccgttgagtttctatgag 23033103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 36550832 - 36550886
Alignment:
Q  22 cttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatga 76  Q
    ||||||| |||||||||||||||||||||||||| |||  || ||| ||||||||    
T  36550832 cttaacaagagaaaaaatatgtcattttataaaaatttcaattgagcttctatga 36550886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 30855471 - 30855536
Alignment:
Q  30 gagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    |||||||||||||||||||||||||  ||| | | |||||| |||||| |||||| ||||||||||    
T  30855471 gagaaaaaatatgtcattttataaatattttcgtagagtttttatgagtattggtgtaggtgacat 30855536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 32238033 - 32238070
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaa 55  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  32238033 gaaacttgacaagagaaaaaatatgtcattttataaaa 32238070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 38879593 - 38879564
Alignment:
Q  30 gagaaaaaatatgtcattttataaaagttt 59  Q
    ||||||||||||||||||||||||||||||    
T  38879593 gagaaaaaatatgtcattttataaaagttt 38879564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 6376771 - 6376707
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    |||||||||  |||||||  ||||||||||||||||||| |||||| ||  |||| |||||||||    
T  6376771 ttaattgcaagtttgatccgttatgtttattttaggttttaagttggtcatttatgttttaaaag 6376707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 3448 - 3335
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| ||||||||| ||||| || |||||||| |||| ||||||    
T  3448 aaggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagt 3349  T
Q  201 tttaagttggtcca 214  Q
    || |||||||||||    
T  3348 ttcaagttggtcca 3335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 55)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 11306670 - 11306557
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| ||||||||| ||||| || |||||||| |||| ||||||    
T  11306670 aaggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagt 11306571  T
Q  201 tttaagttggtcca 214  Q
    || |||||||||||    
T  11306570 ttcaagttggtcca 11306557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 45505472 - 45505363
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| ||||||||| ||||| || |||||||| |||| |||||||| |    
T  45505472 cttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttca 45505373  T
Q  205 agttggtcca 214  Q
    ||||||||||    
T  45505372 agttggtcca 45505363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 49984215 - 49984102
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||| |||| | |||||| ||||||||| ||||| || ||||||||||||| |||  |    
T  49984215 aaggcttaattgcatgtttgatcccttatgtttattttaggtttcatgttggttccttatgttttaaaagtttcaagttggtcccttatgttttaaagtt 49984116  T
Q  201 tttaagttggtcca 214  Q
    || |||||||||||    
T  49984115 ttcaagttggtcca 49984102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 17524619 - 17524511
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||||| | | |||| ||||||||| ||||| ||  |||||||||||| |||||||    
T  17524619 aggcttaattgcatgtttgatctcttacgtttattttagttttcaagttggtactttattttttaaaagtttcaagttgatcccttatgttttaaaagtt 17524520  T
Q  202 ttaagttgg 210  Q
    |||||||||    
T  17524519 ttaagttgg 17524511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 48845705 - 48845821
Alignment:
Q  98 tttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaa 197  Q
    |||| ||||||||||||| |||||||||||||||||||||||| ||  ||||||  ||||||| ||||||||| ||||| || |||||||| |||| |||    
T  48845705 tttatggcttaattgcatgtttgatctcttatgtttattttagtttataagttggccccttatgttttaaaagtttcaagttggtcccttacgttttaaa 48845804  T
Q  198 agttttaagttggtcca 214  Q
    | |||||||||||||||    
T  48845805 aattttaagttggtcca 48845821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 17524200 - 17524301
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| ||||||||| ||||| ||  || ||||||||| ||||||    
T  17524200 aaggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttgatctcttatgttttaaaagt 17524299  T
Q  201 tt 202  Q
    ||    
T  17524300 tt 17524301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 46397306 - 46397415
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| |||||||   ||| ||||||||||||||| ||||||||||| || ||||||||| ||||| || |||||||| |||| ||||||||||    
T  46397306 cttaattgcatgtttgatcctatatatttattttaggtttcgagttgatccctcatgttttaaaagtttcaagttggtcccttacgttttaaaagtttta 46397405  T
Q  205 agttggtcca 214  Q
    ||||||||||    
T  46397406 agttggtcca 46397415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 4416889 - 4416781
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    |||||||||| |||||||||||||||||||||||| ||| |||||| |||||||| ||||||||  || || || ||||||||  ||| |||||||||||    
T  4416889 ttaattgcatgtttgatctcttatgtttattttagtttttaagttggtcccttatgttttaaaaattttaagttggtcccttacattttaaaagttttaa 4416790  T
Q  206 gttggtcca 214  Q
    |||||||||    
T  4416789 gttggtcca 4416781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 18415106 - 18414990
Alignment:
Q  98 tttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaa 197  Q
    |||| |||||||||| || ||||||| |||||||||||||||| |||||||||||||| | || ||||||||| ||||| || |||||||  |||| |||    
T  18415106 tttatggcttaattgtatgtttgatcccttatgtttattttagttttcaagttgatccttcatgttttaaaagtttcaagttggtcccttgcgttttaaa 18415007  T
Q  198 agttttaagttggtcca 214  Q
    ||||| |||||||||||    
T  18415006 agtttcaagttggtcca 18414990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 4416474 - 4416585
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||| ||||||| ||||  |||||||||| ||| ||||||||||||||| ||||||||| ||||| || |||| ||| |||| ||||||||    
T  4416474 ggcttaattgcatgtttgatcccttacatttattttagtttttaagttgatcccttatgttttaaaagtttcaagttggtcctttacgttttaaaagttt 4416573  T
Q  203 taagttggtcca 214  Q
     |||||||||||    
T  4416574 caagttggtcca 4416585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 48338707 - 48338789
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatt 99  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||||||| ||||    
T  48338707 gaaacttaacaatagaaaaaatatgtcattttataaaagtttccattgagtttctatgagtattggtctaggtgacatagatt 48338789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 43913394 - 43913503
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| ||||||| |||||||||||||||| ||| |||||| |||||||||||||||||| || || || |||  ||| |||| |||||||| |    
T  43913394 cttaattgcatgtttgatcccttatgtttattttagtttttaagttggtcccttatattttaaaagttttaaattggtcttttacgttttaaaagtttca 43913493  T
Q  205 agttggtcca 214  Q
    ||||| ||||    
T  43913494 agttgatcca 43913503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 12292892 - 12292992
Alignment:
Q  108 aattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagt 207  Q
    |||||||| ||| ||| |||||||||||||||||||| |||||| |||||| | ||||||||| ||||| || || |||||||||| |||| ||||||||    
T  12292892 aattgcatgtttaatcccttatgtttattttaggtttaaagttggtcccttttgttttaaaagtttcaagttggtaccttatgttttaaaaattttaagt 12292991  T
Q  208 t 208  Q
    |    
T  12292992 t 12292992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 37724809 - 37724737
Alignment:
Q  104 gcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    |||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||  ||||||||| |||||    
T  37724809 gcttaattgcatgtttgatctcttatgtttattttagtttttaagttgatcccttaggttttaaaagtttcaa 37724737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 49983791 - 49983899
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||| |||| || ||| || ||||||||| |||||||||| ||| |||| ||||||||| || || || ||||||||||||| |||| |||    
T  49983791 ggcttaattgcatgtttggtcccttgtgcttattttagatttcaagttggtcctttatgttttaaaagtttgaagttggtcccttatgttttaaaaattt 49983890  T
Q  203 taagttggt 211  Q
    |||||||||    
T  49983891 taagttggt 49983899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 4592765 - 4592662
Alignment:
Q  108 aattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagt 207  Q
    |||||||| |||| || |||||||||||||||||||| |||||| || ||||| ||||||||| || || || ||||||||||||| || ||||| ||||    
T  4592765 aattgcatgtttggtcccttatgtttattttaggttttaagttggtctcttatgttttaaaagttttaagttggtcccttatgttttaacagtttcaagt 4592666  T
Q  208 tggt 211  Q
    ||||    
T  4592665 tggt 4592662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 32223031 - 32222956
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatg-agattggtataggtgacat 94  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||    
T  32223031 gaaacttaaca--agaaaaaatatgtcattttataaaagtttacattgagtttatatgaatattggtataggtgacat 32222956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 48846126 - 48846021
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| ||||||| |||||||||||||||  ||| |||||| |||||||| ||||||||| || ||  | || |||||||||| |||||||| |    
T  48846126 cttaattgcatgtttgatcccttatgtttattttactttttaagttggtcccttatgttttaaaagttttaagatggtgccttatgttttaaaagtttca 48846027  T
Q  205 agttgg 210  Q
    ||||||    
T  48846026 agttgg 48846021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 45505056 - 45505168
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| ||||||| |||||||||||||||| ||| |||||| |  || || ||||||||| ||||  || || ||||| |||| |||||||    
T  45505056 aggcttaattgcatgtttgatcccttatgtttattttagtttttaagttggttactaatgttttaaaagtttcatgttggttccttacgttttaaaagtt 45505155  T
Q  202 ttaagttggtcca 214  Q
    | |||||||||||    
T  45505156 tcaagttggtcca 45505168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 5665857 - 5665794
Alignment:
Q  104 gcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaa 167  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  5665857 gcttaattgcatgtctgatctcttatgtttattttaggtttcaagtttgtcccttatgttttaa 5665794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 5122098 - 5122048
Alignment:
Q  20 aacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagttt 70  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  5122098 aacttaacaagagaaaaaatatgtcattttataaaattttacatcgagttt 5122048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 3666787 - 3666730
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatga 76  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  3666787 aaacttaacaagagaaaaaatatatcattttataaaagttttcattgagtttctatga 3666730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 213
Target Start/End: Original strand, 20870799 - 20870906
Alignment:
Q  104 gcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttt 203  Q
    |||||||||||| || |||  |||||||||||||||| || ||||||  ||||||| |||||||||| ||||| || || ||||| |||| |||||||||    
T  20870799 gcttaattgcatgtt-gattccttatgtttattttagtttccaagttcgtcccttacattttaaaagtttcaagttggt-ccttacgttttaaaagtttt 20870896  T
Q  204 aagttggtcc 213  Q
    ||||||||||    
T  20870897 aagttggtcc 20870906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 31143815 - 31143746
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    ||||||||||||||| |||| || ||  |||||||||||||||||| ||||||||||||| |||||||||    
T  31143815 aaggcttaattgcatgtttggtccctggtgtttattttaggtttcatgttgatcccttatgttttaaaag 31143746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 46471791 - 46471867
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    |||||||||| |||||||||||||||||||||||||| ||| ||| |||||| ||| || |||||| ||||||||||    
T  46471791 aaacttaacaagagaaaaaatatgtcattttataaaaatttccattgagtttttataagtattggtctaggtgacat 46471867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 52485343 - 52485407
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    |||||||||| |||||||  ||||||||||||||| ||| ||||||||||||||| |||||||||    
T  52485343 ttaattgcatgtttgatccattatgtttattttagtttttaagttgatcccttatgttttaaaag 52485407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 18536379 - 18536320
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||  ||||| ||||||    
T  18536379 gaaacttaacaagagaaaaaatatgtcattttataaaagtttccatttagtttatatgag 18536320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 212
Target Start/End: Complemental strand, 48658448 - 48658338
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| ||||||  ||| |||||||||||| ||| || ||| ||  | |||||||||||| || || || ||||||||  ||| |||||||    
T  48658448 aggcttaattgcatgtttgattccttttgtttattttagtttttaaattggtcattcatattttaaaagttttaagttggtcccttagattttaaaagtt 48658349  T
Q  202 ttaagttggtc 212  Q
    |||||||||||    
T  48658348 ttaagttggtc 48658338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 52485755 - 52485689
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttag-gtttcaagttgatcccttatattttaaaag 170  Q
    ||||||||||| |||||||| |||||||||||||||  ||| |||||| ||||||||||||||||||    
T  52485755 cttaattgcatgtttgatcttttatgtttattttagttttttaagttggtcccttatattttaaaag 52485689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 20269281 - 20269168
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    |||| |||||||||| ||||||||| ||||||||||||| |||| |||||| || ||||| ||||||||  || || |   ||||||| |||| ||| ||    
T  20269281 aaggtttaattgcatgtttgatctcgtatgtttattttacgttttaagttggtctcttatgttttaaaaatttaaagtcgttcccttacgttttaaaggt 20269182  T
Q  201 tttaagttggtcca 214  Q
    || |||||||||||    
T  20269181 ttcaagttggtcca 20269168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 7763822 - 7763762
Alignment:
Q  14 agatgaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctat 74  Q
    |||| ||||| |||| ||||||||| |||||||||||||||||||| ||| ||||||||||    
T  7763822 agataaaactaaacacgagaaaaaaaatgtcattttataaaagttttcattgagtttctat 7763762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 18414736 - 18414828
Alignment:
Q  119 tgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttggt 211  Q
    ||||| |||||||||||||||  ||| |||||| |||||||| ||||||||| ||||| || ||||||||  ||| |||| ||| ||||||||    
T  18414736 tgatcccttatgtttattttaatttttaagttggtcccttatgttttaaaagtttcaagttggtcccttacattttaaaaatttcaagttggt 18414828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 31141676 - 31141776
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| |||| || | ||||||||| ||||||||||||||| ||  |||| |||||||   || || || ||||||||||||| |||||||    
T  31141676 aggcttaattgcatgtttggtcccgtatgtttatcttaggtttcaagttggtcatttatgttttaaattttttaagttagtcccttatgttttaaaagtt 31141775  T
Q  202 t 202  Q
    |    
T  31141776 t 31141776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 37724436 - 37724548
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| | |||||||||||||||||||||| ||| || ||| ||| | ||  |||||||| ||||| || ||||||||  ||| |||| ||    
T  37724436 aggcttaattgcatgtatgatctcttatgtttattttagtttttaaattggtccttcatgatttaaaagtttcaagttggtcccttacattttaaaattt 37724535  T
Q  202 ttaagttggtcca 214  Q
    | || ||||||||    
T  37724536 tcaaattggtcca 37724548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 20986763 - 20986822
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| |||||||||||||||||||||| |||||||  || |||||| ||||||    
T  20986763 gaaacttaacaagagaaaaaatatgtcattttattaaagtttctattgagtttatatgag 20986822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 29233113 - 29233172
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||||||||   |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  29233113 gaaacttaacaaaggaaaaaatatgtcattttattaaagttttcattgagtttctatgag 29233172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 14867130 - 14867204
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtga 91  Q
    ||||||||||| |||||| |||||||||||||||| ||||||  ||  |||||||||||| |||||| |||||||    
T  14867130 gaaacttaacaagagaaataatatgtcattttatagaagttttgattaagtttctatgagtattggtctaggtga 14867204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 4689044 - 4689121
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    |||| |||||| |||||||||||| |||||||||| |||||| ||| |||||| |||||| ||| || ||||||||||    
T  4689044 gaaaattaacaagagaaaaaatatatcattttatagaagttttcattgagtttttatgagtatttgtctaggtgacat 4689121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 6102251 - 6102327
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||||||| ||||||||| |||||||||||||||||||| ||| || ||| |||||| |||| | ||||||||||    
T  6102251 gaaacttaacacgagaaaaaa-atgtcattttataaaagttttcattgaatttttatgagtattgatctaggtgacat 6102327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 41312391 - 41312306
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    |||| ||||||  ||||||||||||||||| |||||||||||  || ||||||||||||| | |||| ||||||| || |||||||    
T  41312391 gaaatttaacaatagaaaaaatatgtcattctataaaagtttctattgagtttctatgagtactggtctaggtgatatagatttaa 41312306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 209
Target Start/End: Complemental strand, 54702383 - 54702298
Alignment:
Q  125 cttatgtttattttaggtttcaagttgat-cccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttg 209  Q
    |||||| ||||||||||||| |||||| | ||||| | ||||||||| || || || ||||||||||||| || ||||||||||||    
T  54702383 cttatgattattttaggttttaagttggttcccttctgttttaaaagttttaagttggtcccttatgttttaacagttttaagttg 54702298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 18399387 - 18399443
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctat 74  Q
    ||||||||||| |  |||||||||||||||| |||||||||| ||| ||||||||||    
T  18399387 gaaacttaacaagtcaaaaaatatgtcatttcataaaagtttccattgagtttctat 18399443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 36752860 - 36752968
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    |||| ||||| ||||||| |||||||||||||||  ||| || ||| ||| | || ||||||||| ||||| || |||||||  |||| |||| ||| ||    
T  36752860 ttaaatgcatgtttgatcccttatgtttattttaatttttaaattggtccttcatgttttaaaagtttcaagttggtcccttgcgttttaaaaatttcaa 36752959  T
Q  206 gttggtcca 214  Q
    |||||||||    
T  36752960 gttggtcca 36752968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 41325759 - 41325811
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagttt 70  Q
    |||||||||||  ||||||||||||||||||||| ||||||| ||| ||||||    
T  41325759 gaaacttaacaaaagaaaaaatatgtcattttattaaagtttccattgagttt 41325811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 45170931 - 45170863
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    |||||||||||||| ||||||| |||||||||||||||| ||| || ||| ||| | || |||||||||    
T  45170931 aggcttaattgcatgtttgatcccttatgtttattttagtttttaaattggtccttcatgttttaaaag 45170863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 24671952 - 24672023
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    |||||||| ||||||| || |||| ||||||||||| ||| |||||||||  |||| ||||||||| |||||    
T  24671952 cttaattgtatatttggtcccttaagtttattttagattttaagttgatcatttatgttttaaaagtttcaa 24672023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 7783907 - 7783854
Alignment:
Q  19 aaacttaacatgagaaaaa--atatgtcattttataaaagtttacatcgagttt 70  Q
    |||||||||| ||||||||  | |||||||||||||||||||| ||||||||||    
T  7783907 aaacttaacaagagaaaaagaaaatgtcattttataaaagttttcatcgagttt 7783854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 8312258 - 8312304
Alignment:
Q  30 gagaaaaaatatgtcattttataaaagtttacatcgagtttctatga 76  Q
    |||||||||| ||||||||||||||| ||| ||| ||||||||||||    
T  8312258 gagaaaaaatttgtcattttataaaaattttcattgagtttctatga 8312304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 36106174 - 36106104
Alignment:
Q  33 aaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    |||||||||| | ||||||||||||||  || ||| ||||||||| |||||| |||||||||| |||||||    
T  36106174 aaaaaatatgccgttttataaaagtttcaattgagattctatgagtattggtctaggtgacatagatttaa 36106104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 41260472 - 41260509
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaa 55  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  41260472 gaaactttacaagagaaaaaatatgtcattttataaaa 41260509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 51907415 - 51907456
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagttt 59  Q
    ||||||||||| | |||||||| |||||||||||||||||||    
T  51907415 gaaacttaacaagcgaaaaaatgtgtcattttataaaagttt 51907456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 20268894 - 20268954
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatatttt 165  Q
    ||||||||||| |||| | || |||||||||||||| ||| |||||| |||||||| ||||    
T  20268894 cttaattgcatgtttggtttcgtatgtttattttagattttaagttggtcccttatgtttt 20268954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 29701012 - 29701056
Alignment:
Q  33 aaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||| |||||||||||||||||||||| ||| ||| |||||||||    
T  29701012 aaaatatatgtcattttataaaagttttcattgagcttctatgag 29701056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 35233010 - 35232958
Alignment:
Q  23 ttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatg 75  Q
    |||||| || |||||| ||||||||||||| |||||| ||| |||||||||||    
T  35233010 ttaacaagaaaaaaaaaatgtcattttatagaagttttcattgagtttctatg 35232958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 48685130 - 48685174
Alignment:
Q  33 aaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||||||||||||||||||  | | |||||||||||||    
T  48685130 aaaaaatatgtcattttataaaagttatcgttgagtttctatgag 48685174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 54)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 8718614 - 8718503
Alignment:
Q  100 taaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaag 199  Q
    |||||||||||||||| ||||||| | |||||||||||||||||| |||||| |||||||| ||||||||| ||||| |||||||||||||||| ||||     
T  8718614 taaggcttaattgcatgtttgatcccatatgtttattttaggttttaagttggtcccttattttttaaaagtttcaagtttgtcccttatgttttaaaat 8718515  T
Q  200 ttttaagttggt 211  Q
    ||| ||||||||    
T  8718514 tttcaagttggt 8718503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 31873013 - 31872903
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||| |||| ||| ||||||||| ||||| || |||||||| |||| ||||||||    
T  31873013 ggcttaattgcatatttgatcccttatgtttattttagttttcaagttggtccc-tatgttttaaaagtttcaagttggtcccttacgttttaaaagttt 31872915  T
Q  203 taagttggtcca 214  Q
     |||||||||||    
T  31872914 caagttggtcca 31872903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 42604622 - 42604737
Alignment:
Q  97 atttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaa 196  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| | | |||||||||||||| ||||| || |||||||  |||| ||    
T  42604622 atttaaggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggtactttatattttaaaagtttcaagttggtccctttagttttaa 42604721  T
Q  197 aagttttaagttggtc 212  Q
    |||||| |||||||||    
T  42604722 aagtttcaagttggtc 42604737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 37245637 - 37245746
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||||||||||| |||||||||||||||| ||| |||||| || ||||||||||||||| ||||| ||  |||||||  ||| ||||||||||    
T  37245637 cttaattgcatatttgatcccttatgtttattttagtttttaagttggtctcttatattttaaaagtttcaagttgatcccttacattttaaaagtttta 37245736  T
Q  205 agttggtcca 214  Q
    ||||||||||    
T  37245737 agttggtcca 37245746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 33459890 - 33460004
Alignment:
Q  100 taaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaag 199  Q
    ||||||||||||||||  |||||| |||||||||||||||| |||||||||  |||||||| ||||||||| ||||| || |||| ||| |||| |||||    
T  33459890 taaggcttaattgcatgcttgatcccttatgtttattttagttttcaagttagtcccttatgttttaaaagtttcaagttggtcctttacgttttaaaag 33459989  T
Q  200 ttttaagttggtcca 214  Q
    ||| |||||||||||    
T  33459990 tttcaagttggtcca 33460004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 33460297 - 33460200
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttt 203  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||| ||  ||||||| |||| |||||||||    
T  33460297 ttaattgcatgtttgatctcttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttgatcccttacgttttaaaagtttt 33460200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 35795308 - 35795422
Alignment:
Q  100 taaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaag 199  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||   ||||||||| ||| | || |||||||| |||| ||| |    
T  35795308 taaggcttaattgcatgtttgatctcttatgtttattttagatttcaagttggtcccttgagttttaaaagtttcgagttggtcccttacgttttaaagg 35795407  T
Q  200 ttttaagttggtcca 214  Q
    ||| ||| |||||||    
T  35795408 tttcaaggtggtcca 35795422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 48171849 - 48171743
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| |||| || ||||||||||||||||||||||||||| ||| |||| ||||||||| |||||  |  |||||||||||| |||||||| |    
T  48171849 cttaattgcatgtttggtcccttatgtttattttaggtttcaagttggtcctttatgttttaaaagtttcaagctgttcccttatgttttaaaagtttca 48171750  T
Q  205 agttggt 211  Q
    |||||||    
T  48171749 agttggt 48171743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 48171442 - 48171530
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgttt 193  Q
    ||||||||||| ||||||| |||||||||||||||||||||| |||| |||||||| ||||||||| ||||| || |||||||| ||||    
T  48171442 cttaattgcatgtttgatcccttatgtttattttaggtttcaggttggtcccttatgttttaaaagtttcaagttggtcccttacgttt 48171530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 42605049 - 42604935
Alignment:
Q  98 tttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaa 197  Q
    |||| ||||||||||||| ||||||| |||||||||||||||| ||||||||||  ||||||  ||||||||| ||||| || |||||||| ||||  ||    
T  42605049 tttatggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggacccttaggttttaaaagtttcaagttggtcccttacgtttttaa 42604950  T
Q  198 agttttaagttggtc 212  Q
    ||||| | |||||||    
T  42604949 agtttcatgttggtc 42604935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 19987330 - 19987443
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    ||||||||||||||| ||||||| | |||||||||||||| ||| |||||| ||| |||| ||||||||| || || || |||||||| |||| ||||||    
T  19987330 aaggcttaattgcatgtttgatcccatatgtttattttagtttttaagttgttcctttatgttttaaaagttttaagttggtcccttaagttttaaaagt 19987429  T
Q  201 tttaagttggtcca 214  Q
    || |||||| ||||    
T  19987430 ttcaagttgatcca 19987443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 36203168 - 36203085
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgattt 100  Q
    ||||||||||| ||||| |||||||||||||||||||||||| ||| |||||||||| || |||||| |||||||||| |||||    
T  36203168 gaaacttaacaagagaacaaatatgtcattttataaaagtttccattgagtttctattagtattggtctaggtgacatagattt 36203085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 34517960 - 34518070
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    |||| |||||||||| ||||||| |||||||||||||||| ||| |||||| ||| |||| |||||| || ||||| |  ||||| || |||| ||||||    
T  34517960 aaggtttaattgcatgtttgatcccttatgtttattttagtttttaagttggtccattatgttttaacagtttcaactcggtcccctacgttttaaaagt 34518059  T
Q  201 tttaagttggt 211  Q
    |||||||||||    
T  34518060 tttaagttggt 34518070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 35795729 - 35795623
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| |||| ||  ||||||||||||||| ||| |||||| ||||| || ||||||||| || || || ||||||||||||| |||||||| |    
T  35795729 cttaattgcatgtttggtcctttatgtttattttagattttaagttggtccctgatgttttaaaagttttaaattggtcccttatgttttaaaagtttca 35795630  T
Q  205 agttggt 211  Q
    |||||||    
T  35795629 agttggt 35795623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 143226 - 143117
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    |||||||| || ||||||| |||||||||||||||||||| |||||| |||  |||  |||||||| || || || |||||||| |||| |||||||| |    
T  143226 cttaattgtatgtttgatcccttatgtttattttaggttttaagttggtcctatatgctttaaaagttttaagttggtcccttacgttttaaaagtttca 143127  T
Q  205 agttggtcca 214  Q
    ||||||||||    
T  143126 agttggtcca 143117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 34518355 - 34518258
Alignment:
Q  117 tttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttggtcca 214  Q
    ||||||| |||||||||||||||| ||| |||||| ||| |||||||||||||| || || || |||||||| |||| |||| ||| |||||||||||    
T  34518355 tttgatcccttatgtttattttagtttttaagttggtcctttatattttaaaagttttaaattggtcccttacgttttaaaaatttcaagttggtcca 34518258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 35979993 - 35979909
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    ||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||| ||| || |||||||||| |||||||    
T  35979993 gaaacttaacaagagaaaaaatatgtca-tttataaaagtttccattgagtttctatgagtatttgtctaggtgacatagatttaa 35979909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 9330763 - 9330839
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||||||  ||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||    
T  9330763 aaacttaacaaaagaaaaaatatatcattttataaaagttttcattgagtttctatgagtattggtctaggtgacat 9330839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 3072974 - 3073085
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    |||| |||||||||| |||||||  ||||||||||||||| ||| |||||| |||||| | ||||||||| || || || ||| |||| |||| ||||||    
T  3072974 aaggtttaattgcatgtttgatcctttatgtttattttagattttaagttggtcccttgtgttttaaaagttttaagttggtctcttacgttttaaaagt 3073073  T
Q  201 tttaagttggtc 212  Q
    || |||||||||    
T  3073074 ttcaagttggtc 3073085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 142811 - 142908
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||| |||  || ||||||| |||||||||||| |||||| |||||| | ||||||||  ||||| || ||||||||||||| ||||||||    
T  142811 cttaattgcatgttttgtcccttatgtgtattttaggttttaagttggtcccttgtgttttaaaattttcaagttggtcccttatgttttaaaagttt 142908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 22792290 - 22792387
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    |||||||||||||||| || | ||||||||||||| |||| |||||| |||||| | ||||||||| || || || |||| |||||||| ||||||||    
T  22792290 cttaattgcatatttggtcccatatgtttattttaagttttaagttggtcccttttgttttaaaagttttaagttggtccgttatgttttaaaagttt 22792387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 18834279 - 18834203
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||| || |||||||||||||||||||||||||||||| ||| |||||| ||| || |||||| ||||||||||    
T  18834279 aaacttatcaagagaaaaaatatgtcattttataaaagttttcattgagtttttattagtattggtctaggtgacat 18834203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 40094885 - 40094826
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| |||||| ||||||||||||||| ||||||| ||| |||||||||||||    
T  40094885 gaaacttaacaagagaaataatatgtcattttattaaagttttcattgagtttctatgag 40094826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 18519701 - 18519631
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| || | ||  ||||||||| |||||    
T  18519701 ttaattgcatgtttgatctcttatgtttattttagttttcaagttggtctcatacgttttaaaagtttcaa 18519631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 31872709 - 31872779
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    |||||||||| ||||||| |||||||||||||||| ||| |||||| |||||||  ||||||||| |||||    
T  31872709 ttaattgcatgtttgatcccttatgtttattttagttttaaagttggtcccttacgttttaaaagtttcaa 31872779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 6043446 - 6043554
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||| |||| || ||||| |||||||||||||| ||||   ||| |||||||||||| | ||||| ||||||| |||| ||| ||  ||||    
T  6043446 ggcttaattgcatgtttggtcccttatatttattttaggttttaagt---tccattatattttaaatgtttcaagtttgtccattatattttaattgttt 6043542  T
Q  203 taagttggtcca 214  Q
    ||||||| ||||    
T  6043543 taagttgatcca 6043554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 9249809 - 9249768
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagttt 59  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  9249809 gaaacttaacaagagaaaaaatatgtcattttataaaagttt 9249768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 17989408 - 17989493
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    |||||||| || || |||||| | |||||||||||||||||| ||| ||||||||||| | |||||| |||||||||| |||||||    
T  17989408 gaaacttagcaagaaaaaaaaaaagtcattttataaaagtttccattgagtttctatgtgtattggtctaggtgacatagatttaa 17989493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 19987746 - 19987637
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| ||| |||  ||||||||||||||| |||||||||| | |||| | ||||||||| || | ||| |||||| |  ||| ||||||||||    
T  19987746 cttaattgcatgtttaatcctttatgtttattttagttttcaagttggttccttgtgttttaaaagttttattttggtccctcacattttaaaagtttta 19987647  T
Q  205 agttggtcca 214  Q
    ||||| ||||    
T  19987646 agttgatcca 19987637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 35992316 - 35992232
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    ||||||||||| |||||||||||||||| ||||||||||||| |||  ||||||| |||| ||| || |||||||||| |||||||    
T  35992316 gaaacttaacaagagaaaaaatatgtca-tttataaaagtttccattaagtttctttgagtatttgtctaggtgacatagatttaa 35992232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 22792689 - 22792581
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    ||||||| || |||| || | |||||||||||||||||| |||||| |||||||  ||||||||| || || || |||||||| |||| ||| |||| ||    
T  22792689 ttaattgtatgtttggtcccatatgtttattttaggttttaagttggtcccttaagttttaaaagttttaagttggtcccttacgtttgaaaggtttcaa 22792590  T
Q  206 gttggtcca 214  Q
    ||| |||||    
T  22792589 gttagtcca 22792581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 6248437 - 6248496
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| ||| |||||||||||||||||| ||||||| ||| || ||||||||||    
T  6248437 gaaacttaacaagaggaaaaatatgtcattttattaaagtttccattgaatttctatgag 6248496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 26344767 - 26344708
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| |||||||||||||||||||||| ||||||  |||  ||||||||||||    
T  26344767 gaaacttaacaagagaaaaaatatgtcattttattaaagttctcatttagtttctatgag 26344708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 8718403 - 8718453
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttg 151  Q
    ||||||||||||||| |||| |||||| |||||||||||||||| ||||||    
T  8718403 aaggcttaattgcatgtttggtctcttgtgtttattttaggttttaagttg 8718453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 18519315 - 18519421
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||| ||  ||  |||||||||||||||| ||| |||||| |||||||| ||||||| | || || || |||||||| |||| |||| |||    
T  18519315 ggcttaattgcatgttcaataccttatgtttattttagtttttaagttggtcccttatgttttaaatgttttaagttggtcccttacgttttaaaaattt 18519414  T
Q  203 taagttg 209  Q
     ||||||    
T  18519415 caagttg 18519421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 23474822 - 23474744
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttat-aaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    |||| |||||| |||||||||||||||||||||| |||||||| ||| || |||||||||| |||||| |||| |||||    
T  23474822 gaaaattaacaagagaaaaaatatgtcattttataaaaagtttccattgaatttctatgagtattggtctaggcgacat 23474744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 35375545 - 35375587
Alignment:
Q  32 gaaaaaatatgtcattttataaaagtttacatcgagtttctat 74  Q
    |||||||||||||||||||||||||||| ||| ||||||||||    
T  35375545 gaaaaaatatgtcattttataaaagtttccattgagtttctat 35375587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 52380453 - 52380379
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtga 91  Q
    ||||||||||| |||||||||||||||||||||| |||||||  || || ||||||| || |||||| |||||||    
T  52380453 gaaacttaacaagagaaaaaatatgtcattttattaaagtttttattgaatttctataagtattggtctaggtga 52380379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 14419840 - 14419885
Alignment:
Q  125 cttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    |||||||||||||||||||| |||||| |||||||| |||||||||    
T  14419840 cttatgtttattttaggttttaagttggtcccttatgttttaaaag 14419885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 6693820 - 6693763
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| ||||||||||  |||||||||| ||||||| ||| |||||||||||||    
T  6693820 gaaacttaacaagagaaaaaat--gtcattttattaaagttttcattgagtttctatgag 6693763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 8269009 - 8269061
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagttt 70  Q
    |||||||||||  |||||| |||||||||||||||||||||| ||| ||||||    
T  8269009 gaaacttaacaaaagaaaatatatgtcattttataaaagtttccattgagttt 8269061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 18310330 - 18310386
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctat 74  Q
    |||||||| || ||||||||| |||||||||||||||||||| ||| || |||||||    
T  18310330 gaaacttatcaagagaaaaaacatgtcattttataaaagttttcattgaatttctat 18310386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 37245983 - 37245935
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttg 151  Q
    ||||||||||||| ||||||| |||||||||||||||| ||| ||||||    
T  37245983 ggcttaattgcatgtttgatcccttatgtttattttagtttttaagttg 37245935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 50471464 - 50471536
Alignment:
Q  20 aacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtga 91  Q
    ||||||||  |||||||||| ||||||||||| ||||||  ||| ||||||||||||| |||||| |||||||    
T  50471464 aacttaactagagaaaaaatgtgtcattttattaaagttaccattgagtttctatgagtattggtctaggtga 50471536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 25622604 - 25622679
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    ||||||||||||||| |||  || ||||||||||||||||||||||| ||  || ||||| |||| |||| |||||    
T  25622604 aaggcttaattgcatgtttagtcccttatgtttattttaggtttcaaattagtctcttatgttttgaaagtttcaa 25622679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 39380804 - 39380741
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaa 169  Q
    ||||||||||||||| ||  | |||| |||||| | ||||||||| ||||||||||||||||||    
T  39380804 ttaattgcatatttggtccttcatgtatattttcgatttcaagttaatcccttatattttaaaa 39380741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 13056255 - 13056177
Alignment:
Q  18 gaaacttaacatgagaaaaaa-tatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||  ||  ||||||||||||| ||| || ||||||||||    
T  13056255 gaaacttaacaagagaaaaaaatatgtcattctataaaagttatcactgagtttctatgagtattagtctaggtgacat 13056177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 14099881 - 14099915
Alignment:
Q  35 aaaatatgtcattttataaaagtttacatcgagtt 69  Q
    ||||||||||||||||||||||||||||| |||||    
T  14099881 aaaatatgtcattttataaaagtttacattgagtt 14099915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 21685256 - 21685194
Alignment:
Q  33 aaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||||||||||||||||||||| |  || |||||||||| || |||||| ||||||||||    
T  21685256 aaaaaatatgtcattttataaaagtgtctattgagtttctataagtattggtctaggtgacat 21685194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 13189177 - 13189218
Alignment:
Q  129 tgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    ||||||||||||||||  ||||| ||||||||||||||||||    
T  13189177 tgtttattttaggttttcagttggtcccttatattttaaaag 13189218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 14420192 - 14420083
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| ||||||  |||||||||||||||||||| || ||  ||  |||| ||||||||| ||||| ||  ||  |||||||| |||  ||| |    
T  14420192 cttaattgcatgtttgattccttatgtttattttaggttttaaattagtctattatgttttaaaagtttcaagttaatcaattatgttttaaagatttca 14420093  T
Q  205 agttggtcca 214  Q
    ||||||||||    
T  14420092 agttggtcca 14420083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 25507257 - 25507298
Alignment:
Q  35 aaaatatgtcattttataaaagtttacatcgagtttctatga 76  Q
    |||| |||||||||||||||||||| ||| ||||||||||||    
T  25507257 aaaaaatgtcattttataaaagttttcattgagtttctatga 25507298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 39166919 - 39166882
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaa 55  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  39166919 gaaacttaacaagagaaaaaatatgtcattctataaaa 39166882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 36782077 - 36782033
Alignment:
Q  30 gagaaaaaatatgtcattttataaaagtttacatcgagtttctat 74  Q
    |||||||||||||| ||||||| ||||||| ||| ||||||||||    
T  36782077 gagaaaaaatatgtaattttattaaagtttccattgagtttctat 36782033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 103 - 205
Target Start/End: Original strand, 22793299 - 22793401
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    |||||||||| |||||||  | ||||||||||||||||||||||||||| |||||||| ||||||||| ||||| || ||||||||||||| ||||||||    
T  22793299 ggcttaattggatatttggccccttatgtttattttaggtttcaagttggtcccttatgttttaaaagtttcaagttggtcccttatgttttaaaagttt 22793398  T
Q  203 taa 205  Q
    |||    
T  22793399 taa 22793401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 6612053 - 6611941
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||| | ||||||||| ||||| || |||||||| |||| ||| |||    
T  6612053 aggcttaattgcatgtttgatgtcttatgtttattttagattttaagttgatcccttgtgttttaaaagtttcaagttggtcccttacgttttaaatgtt 6611954  T
Q  202 ttaagttggtcca 214  Q
    | |||||||||||    
T  6611953 tcaagttggtcca 6611941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 29674860 - 29674956
Alignment:
Q  117 tttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttggtcc 213  Q
    ||||||| |||||||||| |||||||||||||||| |||||||||||||||||| ||||| || || ||||| |||| |||||||| ||||||||||    
T  29674860 tttgatcccttatgtttaatttaggtttcaagttggtcccttatattttaaaagtttcaagttggttccttacgttttaaaagtttcaagttggtcc 29674956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 892067 - 891977
Alignment:
Q  13 gagatgaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||||| ||| |||||||||| || ||||||||||||||||| |||||||    
T  892067 gagaagaaacttaacaagagaaaaaacatgtcattttataaaagtttccattgagtttctataagtattggtataggtgacatagatttaa 891977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 34829968 - 34829862
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||| || ||||| ||||||||| ||||  || |||||||| |||| ||| |||| |    
T  34829968 cttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttttaaaagtttcatgttggtcccttacgttttaaaggtttca 34829869  T
Q  205 agttggt 211  Q
    |||||||    
T  34829868 agttggt 34829862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 22793679 - 22793601
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcc 184  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||| |||||||  ||||||||| ||||| |||||||    
T  22793679 ttaattgcatgtttgatcccttatgtttattttaggtttcaagttggtcccttacgttttaaaagtttcaagtttgtcc 22793601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 32190402 - 32190317
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatg-agattggtataggtgacattgatttaa 102  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| | ||| || |||||||||| |||||||    
T  32190402 gaaacttaacaagagaaaaaatatgtcattttataaaagtttccattgagtttctatgaatattagtctaggtgacatagatttaa 32190317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 17342881 - 17342997
Alignment:
Q  98 tttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaa 197  Q
    |||| ||||||||||||| ||| ||| | ||||||||||||||||||||||||| |||||||| ||||||||  ||||| || |||  ||| |||| |||    
T  17342881 tttatggcttaattgcatgtttaatcccgtatgtttattttaggtttcaagttggtcccttatgttttaaaaatttcaagttggtcttttacgttttaaa 17342980  T
Q  198 agttttaagttggtcca 214  Q
    ||||| || ||||||||    
T  17342981 agtttcaaattggtcca 17342997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 10567875 - 10567765
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||||||||||| |||||||||||||||  |||||| ||||| | | || |||||| || ||||| || |||||||| |||| ||||||||    
T  10567875 ggcttaattgcatatttgatcccttatgtttattttaattttcaaattgat-cttcatgttttaagagtttcaagttggtcccttacgttttaaaagttt 10567777  T
Q  203 taagttggtcca 214  Q
     |||||||||||    
T  10567776 caagttggtcca 10567765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 208
Target Start/End: Complemental strand, 28705926 - 28705819
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    ||||||||||||||||| |  |||||||||||||||||| |||| |||||| |||||| | ||||||||  ||||| || ||||||||||||| |||| |    
T  28705926 aaggcttaattgcatatctagtctcttatgtttattttaagttttaagttggtcccttttgttttaaaactttcaagttagtcccttatgttttaaaact 28705827  T
Q  201 tttaagtt 208  Q
    || |||||    
T  28705826 ttcaagtt 28705819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 10567475 - 10567569
Alignment:
Q  117 tttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttggt 211  Q
    ||||||| |||||||||||||||| |||||| ||| |||||||  ||||||||| ||||| || |||||||| |||| |||||||| ||||||||    
T  10567475 tttgatcccttatgtttattttagttttcaaattggtcccttacgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggt 10567569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 6611636 - 6611717
Alignment:
Q  130 gtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttggt 211  Q
    ||||||||||||||||| |||| |||||||| ||||||||| ||||| || |||||| |||||| |||||||| ||||||||    
T  6611636 gtttattttaggtttcaggttggtcccttatgttttaaaagtttcaagttggtccctcatgttttaaaagtttcaagttggt 6611717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 12108298 - 12108222
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||||||| |||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||| ||||| ||||    
T  12108298 gaaacttaacaagagaaaaaatatgtcattttataaaa-ttttcattgagtttctatgagtattggtctaggttacat 12108222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 19134822 - 19134738
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    ||||||||||| |||||||||||||||| ||||||||||||| |||  |||||||||||| |||  | |||||||||| |||||||    
T  19134822 gaaacttaacaagagaaaaaatatgtca-tttataaaagtttccattaagtttctatgagtatttatctaggtgacatagatttaa 19134738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 16971474 - 16971415
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||||||||  ||||||||||||||||||||| ||||||| ||| | |||||||||||    
T  16971474 gaaacttaacaaaagaaaaaatatgtcattttattaaagtttccattgtgtttctatgag 16971415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 29048910 - 29048968
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||||||||||||| |||||||||||| ||||||| ||| |||||| ||||||    
T  29048910 gaaacttaacatgagaaaaaa-atgtcattttattaaagttttcattgagtttttatgag 29048968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 11122318 - 11122248
Alignment:
Q  100 taaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    ||||||||||||| || ||||||| |||||||||||||||||||  |||||| ||  |||| |||||||||    
T  11122318 taaggcttaattgtatgtttgatcccttatgtttattttaggttgtaagttggtcatttatgttttaaaag 11122248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 9686412 - 9686471
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| |||||||||||| | ||||||| ||||||| ||| || ||||||||||    
T  9686412 gaaacttaacaagagaaaaaatattttattttattaaagttttcattgaatttctatgag 9686471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 13092360 - 13092419
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| |||||||| ||||||||||||| ||  ||| ||| |||||||||||||    
T  13092360 gaaacttaacaagagaaaaattatgtcattttattaacattttcattgagtttctatgag 13092419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 4563242 - 4563304
Alignment:
Q  33 aaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    |||||||||| | ||||||||||||||  || ||||||||||||| |||||| ||||||||||    
T  4563242 aaaaaatatgccgttttataaaagtttttattgagtttctatgagtattggtgtaggtgacat 4563304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 8064853 - 8064910
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||  |||||| ||||||||||| |||||||||| ||| |||||||||||||    
T  8064853 aaacttaacaaaagaaaatatatgtcattt-ataaaagttttcattgagtttctatgag 8064910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 11121935 - 11121969
Alignment:
Q  142 tttcaagttgatcccttatattttaaaagattcaa 176  Q
    ||||||||||||||||||||||||||||| |||||    
T  11121935 tttcaagttgatcccttatattttaaaagtttcaa 11121969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 19278981 - 19279023
Alignment:
Q  126 ttatgtttattttaggtttcaagttgatcccttatattttaaa 168  Q
    ||||||||||||||||||| ||||||||||  |||||||||||    
T  19278981 ttatgtttattttaggttttaagttgatcctctatattttaaa 19279023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 28613578 - 28613472
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    ||||||| || ||||||| |||||||||||||||  ||| || ||| ||| |  | ||||||||  ||||| || |||||||| |||| |||||||| ||    
T  28613578 ttaattgtatgtttgatcccttatgtttattttaatttttaaattggtccttcttgttttaaaaatttcaagttggtcccttacgttttaaaagtttcaa 28613479  T
Q  206 gttggtc 212  Q
    |||||||    
T  28613478 gttggtc 28613472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 28633307 - 28633348
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagttt 59  Q
    ||||||||||| |||||||||||  |||||||||||||||||    
T  28633307 gaaacttaacaagagaaaaaatacttcattttataaaagttt 28633348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 29674913 - 29674986
Alignment:
Q  141 gtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttggtcca 214  Q
    ||||||||||| | |||||  ||||||||| ||||| || |||||||| |||| |||||||| |||||| ||||    
T  29674913 gtttcaagttggttccttacgttttaaaagtttcaagttggtcccttaagttttaaaagtttcaagttgatcca 29674986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 32629059 - 32629108
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagtt 150  Q
    |||| |||||| ||| ||||||| |||||||||||||||||||| |||||    
T  32629059 aaggtttaattacatgtttgatcccttatgtttattttaggttttaagtt 32629108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 4577454 - 4577514
Alignment:
Q  18 gaaacttaacatgagaaaa-aatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||| |||||| ||||||| |||||||| |||||||||||||| ||| || ||||||||||    
T  4577454 gaaaattaacaagagaaaataatatgtcgttttataaaagttttcattgaatttctatgag 4577514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 6210345 - 6210297
Alignment:
Q  122 tctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    ||||||||||||||||||| ||| |||||| | |||||| |||||||||    
T  6210345 tctcttatgtttattttagattttaagttggtgccttatgttttaaaag 6210297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 6273620 - 6273680
Alignment:
Q  108 aattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaa 168  Q
    |||||||| ||| |||| |||||||||||||| ||||||||||| | | |||| |||||||    
T  6273620 aattgcatgtttaatctattatgtttattttacgtttcaagttggttctttatgttttaaa 6273680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 7169801 - 7169741
Alignment:
Q  18 gaaacttaacatgagaaaaa-atatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||  |||||||| |||||||||||||| ||||||| ||| || ||||||||||    
T  7169801 gaaacttaacgagagaaaaatatatgtcattttattaaagttttcattgaatttctatgag 7169741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 4623515 - 4623406
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||| ||||||| |||||||||||||||| |||||||||||||| |||| ||||||||| |||||  | ||| ||||||||| ||||||||    
T  4623515 ggcttaattgcatgtttgatcccttatgtttattttagttttcaagttgatcctttatgttttaaaagtttcaagatagtcacttatgttttaaaagttt 4623416  T
Q  203 taagttggtc 212  Q
     |||||||||    
T  4623415 caagttggtc 4623406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 9710216 - 9710325
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| ||||||| |||||||||||||||| ||| |||||| |||||||| ||||||||| ||||| || ||||||||  ||| |||||||| |    
T  9710216 cttaattgcatgtttgatcccttatgtttattttagtttttaagttggtcccttatgttttaaaagtttcaagttggtcccttacattttaaaagtttca 9710315  T
Q  205 agttggtcca 214  Q
    ||||||||||    
T  9710316 agttggtcca 9710325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 18429440 - 18429513
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  18429440 ggcttaattgcatgtttgatctcttatgtttattttagttttcaagttggtcccttatattttaaaagtttcaa 18429513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 7644776 - 7644887
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    ||||||||||||||| ||||||| |||||||||||||||| ||| |||||| |||||||| ||||||||| ||||| ||  ||||||| |||| |||| |    
T  7644776 aaggcttaattgcatgtttgatc-cttatgtttattttagtttttaagttggtcccttatgttttaaaagtttcaagttgatcccttacgttttaaaaat 7644874  T
Q  201 tttaagttggtcc 213  Q
    |||||||||||||    
T  7644875 tttaagttggtcc 7644887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 34439213 - 34439331
Alignment:
Q  96 gatttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttca 195  Q
    ||||| ||||||||||| || |||||||||||||||||||||||| ||| |||||| | | |||  ||||||||||||||| || |||||||| |||| |    
T  34439213 gattttaggcttaattgtatgtttgatctcttatgtttattttagtttttaagttggttcgttaggttttaaaagattcaagttggtcccttacgtttta 34439312  T
Q  196 aaagttttaagttggtcca 214  Q
    |||| || |||||||||||    
T  34439313 aaagattcaagttggtcca 34439331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 18935457 - 18935353
Alignment:
Q  109 attgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagtt 208  Q
    ||||||| |||| || |||||||||||||||||||||| |||| |||||||| ||||||||| ||||| || ||| ||| ||||| |||||||| |||||    
T  18935457 attgcatgtttggtcccttatgtttattttaggtttcatgttggtcccttatgttttaaaagtttcaagttggtctcttgtgttttaaaagtttcaagtt 18935358  T
Q  209 ggtcc 213  Q
    |||||    
T  18935357 ggtcc 18935353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 34439639 - 34439527
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| ||||||| |||||||||||||||| ||| || ||| ||| | || ||||||||| ||||| || |||||||| |||| |||||||    
T  34439639 aggcttaattgcatgtttgatcccttatgtttattttagtttttaaattggtccttcatgttttaaaagtttcaagttggtcccttacgttttaaaagtt 34439540  T
Q  202 ttaagttggtcca 214  Q
    | |||||||||||    
T  34439539 taaagttggtcca 34439527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 34687755 - 34687863
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    |||||||||| ||||| | |||||||||||||||||||| |||||| | | |||| ||||||||  ||||| || ||||||||||||| |||||||| ||    
T  34687755 ttaattgcatgtttgaccccttatgtttattttaggttttaagttggttctttatgttttaaaaatttcaagttggtcccttatgttttaaaagtttcaa 34687854  T
Q  206 gttggtcca 214  Q
    |||||||||    
T  34687855 gttggtcca 34687863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 4623069 - 4623178
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| ||||||| |||||||||||||||| ||| || |||||||||||| ||||||||| || || || ||| |||| |||| ||| |||| |    
T  4623069 cttaattgcatgtttgatcccttatgtttattttagtttttaaattgatcccttatgttttaaaagttttaagttggtctcttacgttttaaaggtttca 4623168  T
Q  205 agttggtcca 214  Q
    ||||||||||    
T  4623169 agttggtcca 4623178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 7535665 - 7535557
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    |||||||||| ||||||  ||||| |||||||| ||||||||||||  ||||||| ||||||||||||||| || ||||||||  ||| | | |||||||    
T  7535665 ttaattgcatgtttgattccttatatttatttttggtttcaagttggccccttatgttttaaaagattcaagttggtcccttacattttacaggttttaa 7535566  T
Q  206 gttggtcca 214  Q
    |||||||||    
T  7535565 gttggtcca 7535557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 16049889 - 16049783
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    |||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| ||||||||| || || ||  |  |||| |||| |||||||| ||    
T  16049889 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagttttaagttgat--cttacgttttaaaagtttcaa 16049792  T
Q  206 gttggtcca 214  Q
    |||||||||    
T  16049791 gttggtcca 16049783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 18935050 - 18935159
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| |||| |||||||||||||||||| |||| |||||| |||||| | ||||||||  || || || ||||||||||||  |||||||    
T  18935050 aggcttaattgcatgtttggtctcttatgtttattttaagttttaagttggtcccttttgttttaaaacttttaagttggtcccttatgttataaaagtt 18935149  T
Q  202 ttaagttggt 211  Q
    | || |||||    
T  18935150 tcaaattggt 18935159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 214
Target Start/End: Complemental strand, 7645201 - 7645087
Alignment:
Q  100 taaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaag 199  Q
    |||| |||||| |||| ||||||| |||||||||||||||| ||| |||||  ||| |||||||||||||| ||||| ||  |||||||  ||| |||||    
T  7645201 taagacttaatcgcatgtttgatcccttatgtttattttagtttttaagttagtcctttatattttaaaagtttcaagttgatcccttacattttaaaag 7645102  T
Q  200 ttttaagttggtcca 214  Q
    ||| |||||| ||||    
T  7645101 tttcaagttgatcca 7645087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 18429738 - 18429627
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||| ||| ||||||| ||||||||||||| || |||||| ||| ||  | || ||||||||| || || || |||||||| |||| |||||||    
T  18429738 aggcttaatttcatgtttgatcccttatgtttattt-agttttcaaattggtctttcatgttttaaaagtttaaagttggtcccttacgttttaaaagtt 18429640  T
Q  202 ttaagttggtcca 214  Q
    |||||||||||||    
T  18429639 ttaagttggtcca 18429627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 18548539 - 18548647
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    |||||||||| ||||||  |||||||||||||||||||| |||||| | | |||| ||||||||| || || || ||  |||| |||| ||| |||||||    
T  18548539 ttaattgcatgtttgattccttatgtttattttaggttttaagttggtactttatgttttaaaagttttaagttggtttcttacgttttaaaggttttaa 18548638  T
Q  206 gttggtcca 214  Q
    |||||||||    
T  18548639 gttggtcca 18548647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 1271497 - 1271556
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| |||||||||||| ||||||||| ||||||| ||| |||||||||||||    
T  1271497 gaaacttaacaagagaaaaaatatatcattttattaaagtttccattgagtttctatgag 1271556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 27674885 - 27674960
Alignment:
Q  20 aacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||| | |||||||||||||||||||||||||||||| ||  ||||||||||||| |||||| |||| |||||    
T  27674885 aacttaagaagagaaaaaatatgtcattttataaaagtttccaatgagtttctatgagtattggtctaggggacat 27674960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 25879561 - 25879670
Alignment:
Q  98 tttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaa 197  Q
    |||||||||||||||||| |||||||| ||||||||||||| | ||| |||||| ||| |||| ||||||||| || || || ||| |||| |||| ||     
T  25879561 tttaaggcttaattgcatgtttgatct-ttatgtttatttttgtttttaagttggtccattatgttttaaaagttttaaattggtcacttacgttttaat 25879659  T
Q  198 agttttaagtt 208  Q
    ||||| |||||    
T  25879660 agtttcaagtt 25879670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 12073939 - 12073863
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgaca 93  Q
    |||||||| || |||||||||||||||||||| ||||||||| |||  ||||| |||||| |||||| |||||||||    
T  12073939 gaaacttagcaagagaaaaaatatgtcattttgtaaaagttttcattaagtttttatgagtattggtctaggtgaca 12073863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 9012554 - 9012503
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtt 69  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||| |||||    
T  9012554 gaaacttaacaagagaaaatatatgtcattttataaaagtttccattgagtt 9012503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 12659988 - 12659930
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||| | ||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  12659988 gaaacttaatacgagaaaaaatatgtcattttatagaagttt-cattgagtttctatgag 12659930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 28441833 - 28441892
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||||||||  ||||| ||||||||||||||||||||||| ||| |||||| ||||||    
T  28441833 gaaacttaacaaaagaaagaatatgtcattttataaaagttttcattgagtttttatgag 28441892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 32665961 - 32665851
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||| |  | |||||||||||||||| |||||| ||||||  || ||| | |||||||| || || || | ||||||||||| || |||||    
T  32665961 ggcttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttaca-tttaaaagttttaaattggacccttatgttttaagagttt 32665863  T
Q  203 taagttggtcca 214  Q
    ||||||||||||    
T  32665862 taagttggtcca 32665851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 7535292 - 7535346
Alignment:
Q  97 atttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttg 151  Q
    |||| |||||||||||||| |||| |||||||||||||||||| |||| ||||||    
T  7535292 attttaggcttaattgcatgtttggtctcttatgtttattttacgttttaagttg 7535346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 3016093 - 3016008
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgt 191  Q
    |||||||||| |||| || |||| |||||||||||||||||||||| ||||  || ||| ||||| ||||| ||  ||||||||||    
T  3016093 ttaattgcatgtttggtcccttaagtttattttaggtttcaagttggtcccccatctttaaaaagtttcaagttgatcccttatgt 3016008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 28801950 - 28802014
Alignment:
Q  31 agaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    |||||||| |||||||||||||||| ||||||| |||||||||| || |||| | ||||||||||    
T  28801950 agaaaaaaaatgtcattttataaaaatttacattgagtttctataagtattgatctaggtgacat 28802014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 15452385 - 15452326
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||| |||||| || |||||||||||||||| |||||||| | ||| |||||||||||||    
T  15452385 gaaatttaacaagaaaaaaaatatgtcatttaataaaagtctccattgagtttctatgag 15452326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 40436814 - 40436857
Alignment:
Q  31 agaaaaaatatgtcattttataaaagtttacatcgagtttctat 74  Q
    ||||||||||||||||||||||||| ||| ||| ||||||||||    
T  40436814 agaaaaaatatgtcattttataaaaatttccattgagtttctat 40436857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 12193178 - 12193107
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtga 91  Q
    ||||||||||  |||||||| |||||||||||| ||||||| ||| || |||||||||| |||||| |||||||    
T  12193178 aaacttaaca--agaaaaaaaatgtcattttattaaagtttccattgaatttctatgagtattggtctaggtga 12193107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 12437606 - 12437535
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtga 91  Q
    ||||||||||  |||||||| |||||||||||| ||||||| ||| || |||||||||| |||||| |||||||    
T  12437606 aaacttaaca--agaaaaaaaatgtcattttattaaagtttccattgaatttctatgagtattggtctaggtga 12437535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 18755043 - 18754985
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatga 76  Q
    ||||||||||| ||||||||| ||  ||||||||||||||||  || ||||||||||||    
T  18755043 gaaacttaacaagagaaaaaaaattccattttataaaagtttctattgagtttctatga 18754985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 30942942 - 30942980
Alignment:
Q  36 aaatatgtcattttataaaagtttacatcgagtttctat 74  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  30942942 aaatatgtcattttataaaagttttcattgagtttctat 30942980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 41346275 - 41346333
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||| ||||| ||||||||| ||||||| ||||||||| || ||| |||||||||||||    
T  41346275 aaacctaacaagagaaaaaacatgtcatgttataaaagcttccattgagtttctatgag 41346333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 16049480 - 16049589
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    ||||||||||| || |||| | |||||||||||| | ||| || ||| | |||||| ||||||||| || || || |||||||  |||| |||| ||| |    
T  16049480 cttaattgcatgttcgatcccgtatgtttattttggtttttaatttggttccttatgttttaaaagttttaagttggtccctttcgttttaaaaatttca 16049579  T
Q  205 agttggtcca 214  Q
    ||||||||||    
T  16049580 agttggtcca 16049589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 18548922 - 18548881
Alignment:
Q  129 tgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    |||||||||||||||| |||||| || |||||||||||||||    
T  18548922 tgtttattttaggttttaagttggtctcttatattttaaaag 18548881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 21445985 - 21446050
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    ||||||||||| |||| || ||||| |||||||||| ||| |||||| |||||||  |||||||||    
T  21445985 cttaattgcatgtttggtcccttatatttattttagattttaagttggtcccttacgttttaaaag 21446050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 24681807 - 24681754
Alignment:
Q  18 gaaacttaacatgagaaaaaa-tatgtcattttataaaagtttacatcgagttt 70  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||| ||| ||||||    
T  24681807 gaaacttaacaagagaaaaaaatatgtcattttattaaagtttccattgagttt 24681754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 31477905 - 31477852
Alignment:
Q  24 taacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||| |||||||| ||||| ||||| ||||||||| ||| |||||||||||||    
T  31477905 taacaagagaaaaagtatgtaattttgtaaaagtttccattgagtttctatgag 31477852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 33419957 - 33419849
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| ||||||| |||||||||||||||  ||| |||||| |||||||| ||||||||| |||||  | |||||||| |||| |||||||    
T  33419957 aggcttaattgcatgtttgatcccttatgtttattttactttttaagttggtcccttatgttttaaaagtttcaagatggtcccttacgttttaaaagtt 33419858  T
Q  202 ttaagttgg 210  Q
    |||||||||    
T  33419857 ttaagttgg 33419849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 33241846 - 33241955
Alignment:
Q  105 cttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttta 204  Q
    |||||||||||  ||| || |||| |||||||||||||||||||||| |||||||| ||||||||| || ||||| || |||||| ||| |||||||| |    
T  33241846 cttaattgcatggttggtcccttaagtttattttaggtttcaagttgttcccttatgttttaaaagttttaatttggttccttatattttaaaagtttca 33241945  T
Q  205 agttggtcca 214  Q
    | ||||||||    
T  33241946 aattggtcca 33241955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 21562917 - 21562992
Alignment:
Q  20 aacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| || ||| ||||||||||    
T  21562917 aacttaacaagagaaaaaatatgtcatttcataaaaatttacatcgagtttctatgagtatcggtctaggtgacat 21562992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 2832104 - 2832027
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||| |||||| |||||| ||||||  |||||||||    
T  2832104 gaaacttaacaagagaaaaaaaatgtcattttataaaagtttacattgagtttttatgagtattggtccaggtgacat 2832027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 51660720 - 51660646
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtga 91  Q
    |||||||| || |||||||||||||||||||||||||||||| ||| |||||||||| || |||||| |||||||    
T  51660720 gaaacttatcaagagaaaaaatatgtcattttataaaagttttcattgagtttctataagtattggtctaggtga 51660646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 4280652 - 4280709
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatga 76  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  4280652 aaacttaacaagagaaaaaatatgtcattttatagaagttttcattgagtttctatga 4280709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 54341517 - 54341438
Alignment:
Q  97 atttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    |||| ||||||||||| || |||||||||||||||||||||||  |||  ||||| ||||||| |||||||||| |||||    
T  54341517 attttaggcttaattgtatgtttgatctcttatgtttattttaatttttgagttggtcccttagattttaaaagtttcaa 54341438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 26758593 - 26758650
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatg 75  Q
    ||||||||||| ||||||||||||||||||| || ||||||| ||| |||||||||||    
T  26758593 gaaacttaacaagagaaaaaatatgtcatttgattaaagttttcattgagtttctatg 26758650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 37285546 - 37285655
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||| ||| ||| ||| |||||||||||||||||||  |||||||| ||||   ||||||||| ||||| ||  ||||||| |||| ||| ||||    
T  37285546 ggcttaattacatgtttaatcccttatgtttattttaggttataagttgattccttcagttttaaaagtttcaagttaatcccttacgttttaaaggttt 37285645  T
Q  203 taagttggtc 212  Q
     |||||||||    
T  37285646 caagttggtc 37285655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 37285938 - 37285889
Alignment:
Q  127 tatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    |||||||||||||||||| |||||| |||||||||||||||||| |||||    
T  37285938 tatgtttattttaggttttaagttggtcccttatattttaaaagtttcaa 37285889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 38651742 - 38651689
Alignment:
Q  24 taacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||| |||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  38651742 taacaagagaaaaaatatgtaattttataaaagtttccattgagtttctatgag 38651689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 44651332 - 44651385
Alignment:
Q  24 taacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||| |||||||||||||||||||||||||||||| ||| || ||||||||||    
T  44651332 taacaagagaaaaaatatgtcattttataaaagtttccattgaatttctatgag 44651385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 54341204 - 54341312
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    |||||||||| ||||||| ||||||||||||||||  || || ||| ||  | || ||||||||| || || || |||||||| |||| |||||||| ||    
T  54341204 ttaattgcatgtttgatcccttatgtttattttagtatttaaattggtcgttcatgttttaaaagttttaagttggtcccttacgttttaaaagtttcaa 54341303  T
Q  206 gttggtcca 214  Q
    |||||||||    
T  54341304 gttggtcca 54341312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 30548125 - 30548035
Alignment:
Q  126 ttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaat--tttgtcccttatgtttcaaaagttttaagttggtcca 214  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||| |||||   ||  || |||| |||| |||||||| |||||||||||    
T  30548125 ttatgtttattttaggtttcaagttggtcccatatcttttaaaagtttcaaaagttgatctcttacgttttaaaagtttcaagttggtcca 30548035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 55467361 - 55467302
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||||||||  |||||||| |||||||||||| ||||||| ||| |||||||||||||    
T  55467361 gaaacttaacaaaagaaaaaacatgtcattttattaaagttttcattgagtttctatgag 55467302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 30547738 - 30547846
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||| || ||||||||||||||||||||  ||| | |||| || ||||| ||||||||| || || || ||||||||  ||| ||| ||||    
T  30547738 ggcttaattgcatgtt-gatctcttatgtttatttta-attttaggttggtcgcttatgttttaaaagttttaagttggtcccttactttttaaaggttt 30547835  T
Q  203 taagttggtcc 213  Q
    |||||||||||    
T  30547836 taagttggtcc 30547846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 48618897 - 48618839
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttat 160  Q
    |||||||||||||| ||||||| ||||| ||||||||||| ||||||||| || |||||    
T  48618897 aggcttaattgcatgtttgatcccttatatttattttaggcttcaagttggtctcttat 48618839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 51388176 - 51388062
Alignment:
Q  101 aaggcttaatt-gcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaag 199  Q
    ||||||||||| | || ||||||  |||||||||||||||| ||| |||||| || ||||| ||||||||| || || ||  |||||||  ||| |||||    
T  51388176 aaggcttaatttgaatgtttgattccttatgtttattttagtttttaagttggtctcttatgttttaaaagttttaagttgatcccttacattttaaaag 51388077  T
Q  200 ttttaagttggtcca 214  Q
    |||||| ||||||||    
T  51388076 ttttaaattggtcca 51388062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 54122686 - 54122744
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatga 76  Q
    ||||||||||  ||||||||||||||||| |||| ||||||| ||| ||||||||||||    
T  54122686 gaaacttaaccagagaaaaaatatgtcatattattaaagtttccattgagtttctatga 54122744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 4764071 - 4764108
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaa 55  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4764071 gaaacttaacaagagaaaaaatatgtcattttataaaa 4764108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 20846838 - 20846879
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagttt 59  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  20846838 gaaactttacaagagaaaaaatatgtcattttataaaagttt 20846879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 48618473 - 48618586
Alignment:
Q  98 tttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaa 197  Q
    |||||||||||||| |||||||| |  |||||||||||||||||||| || ||| |   |||| ||||||||| || || || || |||||||||| ||     
T  48618473 tttaaggcttaattacatatttggttccttatgtttattttaggttttaaattggttatttatgttttaaaagttttaaattggttccttatgttttaac 48618572  T
Q  198 agttttaagttggt 211  Q
    | ||| ||||||||    
T  48618573 aatttcaagttggt 48618586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 37045690 - 37045734
Alignment:
Q  33 aaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||    
T  37045690 aaaaaatatgacattttataaaagttttcattgagtttctatgag 37045734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 19540851 - 19540930
Alignment:
Q  132 ttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttggt 211  Q
    ||||||||||||| |||||| |||||||| ||||||||| || |  || |||| |||||||| || |||||||| |||||    
T  19540851 ttattttaggttttaagttggtcccttatgttttaaaagttttatgttggtcctttatgttttaacagttttaaattggt 19540930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 19541248 - 19541201
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagtt 150  Q
    ||||||||||||| |||||| ||||||||||||||| ||||| |||||    
T  19541248 ggcttaattgcatgtttgatatcttatgtttatttttggttttaagtt 19541201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 22472783 - 22472724
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| ||||||||||||||||||| ||| |  ||| ||| |||||||||||||    
T  22472783 gaaacttaacaagagaaaaaatatgtcatttgatagatattttcattgagtttctatgag 22472724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 52632509 - 52632563
Alignment:
Q  33 aaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtata 86  Q
    ||||||||||||||||||||||||||| | | |||||| |||||| |||||||||    
T  52632509 aaaaaatatgtcattttataaaagtttccgttgagtttgtatgagtattggtata 52632563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 39639937 - 39639876
Alignment:
Q  109 attgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    ||||||| |||  |||||| | || ||||||||||| |||||| ||||||||||||||||||    
T  39639937 attgcatgtttcgtctcttttattcattttaggttttaagttggtcccttatattttaaaag 39639876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 40485013 - 40484937
Alignment:
Q  133 tattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttgg 210  Q
    ||||||||||||||||||| ||||||||  |||||||| ||||| || |||  |||||||| ||| |||| |||||||    
T  40485013 tattttaggtttcaagttggtcccttat-gtttaaaagtttcaaattggtcatttatgttttaaaggtttcaagttgg 40484937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 33419589 - 33419649
Alignment:
Q  154 cccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttggtcca 214  Q
    ||||||| ||||||||| || || || |||||||| |||| |||||||| |||||||||||    
T  33419589 cccttatcttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtcca 33419649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 50578702 - 50578658
Alignment:
Q  33 aaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||||||||||||||||||||  || ||| |||||||||||||    
T  50578702 aaaaaatatgtcattttataaaaacttccattgagtttctatgag 50578658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 33992331 - 33992441
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||||||  |||||||| ||||| ||| || || || |||||||| |||| ||||||    
T  33992331 aaggcttaattgcatgtttgatcccttatgtttattttagttttcaagttcgtcccttatgttttataagttttaaattggtcccttacgttttaaaagt 33992430  T
Q  201 tttaagttggt 211  Q
    || ||||||||    
T  33992431 ttcaagttggt 33992441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 18432454 - 18432530
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||||| || |||||||||||||||||||||||||||| ||| || |||||||||| |||||||||||||||||    
T  18432454 aaacttaacgtgggaaaaaatatgtcattttataaaagttttcattgattttctatgagtattggtataggtgacat 18432530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 33992754 - 33992642
Alignment:
Q  99 ttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaa 198  Q
    ||||||||||||||||| ||||||| |||||||||||||||| ||| || ||| ||| |||| ||||||||| || || || || ||||| |||| ||||    
T  33992754 ttaaggcttaattgcatgtttgatcccttatgtttattttagtttttaaattggtcctttatgttttaaaagttttaaattggttccttacgttttaaaa 33992655  T
Q  199 gttttaagttggt 211  Q
    ||||||| |||||    
T  33992654 gttttaaattggt 33992642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 42920757 - 42920698
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| ||||||||||||||||||||||||||||||  || |||||||||||||    
T  42920757 gaaacttaacaagagaaaaaatatgtcattttataaaagttttaattgagtttctatgag 42920698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 41805543 - 41805466
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    |||||||| || |||||||||| ||||||||||||||||||| ||| |||||||||| || |||||| ||||||||||    
T  41805543 gaaacttatcaagagaaaaaatgtgtcattttataaaagtttccattgagtttctataagtattggtctaggtgacat 41805466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 6633680 - 6633752
Alignment:
Q  31 agaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||  | ||||||| |||||||    
T  6633680 agaaaaaatatgtcattttataaaagttttcattgagtttctatgagtattggtccacgtgacatagatttaa 6633752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 19935431 - 19935542
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| || | ||||||||||||||||| ||||| |||||| ||| |||| ||||| ||  ||||| || |||||| |||||| ||||| |    
T  19935431 aggcttaattgcatgttgggtctcttatgtttatttttggttttaagttggtccattatgttttataaatttcaagttggtccctgatgttttaaaag-t 19935529  T
Q  202 ttaagttggtcca 214  Q
    | |||||||||||    
T  19935530 tcaagttggtcca 19935542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 25508216 - 25508108
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    |||||||||| |||| || |||| ||| ||||||||||| |||||| |||||||| ||||||||| ||||| || |||| |||| |||    ||||||||    
T  25508216 ttaattgcatgtttggtcccttaagttgattttaggttttaagttgctcccttatgttttaaaagtttcaagttcgtcctttatatttttttagttttaa 25508117  T
Q  206 gttggtcca 214  Q
    |||||||||    
T  25508116 gttggtcca 25508108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 16642746 - 16642813
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaa 168  Q
    |||| |||||||||  ||||||| |||||||||||||||||||| |||||| |||||||| |||||||    
T  16642746 aaggattaattgcaagtttgatcccttatgtttattttaggttttaagttggtcccttatgttttaaa 16642813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 22553721 - 22553780
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| ||||||||||||||||||||||| ||||||  || |||||||||||||    
T  22553721 gaaacttaacaagagaaaaaatatgtcattttatagaagttttaattgagtttctatgag 22553780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 38147475 - 38147533
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatga 76  Q
    |||| |||||| |||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  38147475 gaaatttaacaagagaaaaaatatatcattttataaaagttttcattgagtttctatga 38147533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 41455242 - 41455296
Alignment:
Q  23 ttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||| |||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  41455242 ttaacaagagaaaaaatatgtcattttattaaagtttccattgagtttctatgag 41455296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 19328409 - 19328472
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaa 169  Q
    ||||||||||  |||||| |||||||||||||||| ||| |||||| ||| |||||||||||||    
T  19328409 ttaattgcatgattgatcccttatgtttattttagtttttaagttggtcctttatattttaaaa 19328472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 23418332 - 23418409
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||||||| |||||||||||||||| |||||| |||||| |||   |||||||||||  ||||| ||||||||||    
T  23418332 gaaacttaacaagagaaaaaatatgtcagtttatagaagtttgcattttgtttctatgagtgttggtctaggtgacat 23418409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 18697489 - 18697601
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| ||||||  |||||| ||||||||  ||||| |||| || |||||| ||||||||||| || ||  || ||||||||| |||  ||    
T  18697489 aggcttaattgcatgtttgattccttatgcttattttaaatttcatgttggtctcttatactttaaaagatttaagttgatctcttatgttttaaatttt 18697588  T
Q  202 ttaagttggtcca 214  Q
    |||| ||| ||||    
T  18697589 ttaaattgttcca 18697601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 31075339 - 31075299
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtt 58  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  31075339 gaaacttaacaagagaaaaaatatgtcattttatgaaagtt 31075299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 36568081 - 36568137
Alignment:
Q  21 acttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||||| |||||||||||||||||| ||| ||||||| ||| |||||| ||||||    
T  36568081 acttaacaagagaaaaaatatgtcattgtatcaaagtttccattgagtttttatgag 36568137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 11130591 - 11130557
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttag 140  Q
    |||||||||| ||||||||||||||||||||||||    
T  11130591 ttaattgcatgtttgatctcttatgtttattttag 11130557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 16643128 - 16643058
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    ||||||| || |||| ||||||| || |||||||||||| | |||| ||| |||||||||||||| |||||    
T  16643128 ttaattgtatgtttggtctcttacgtgtattttaggttttatgttggtcctttatattttaaaagtttcaa 16643058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 35727350 - 35727412
Alignment:
Q  33 aaaaaatatgtcattttataaaagtttacatcgagtttctatg-agattggtataggtgacat 94  Q
    |||||| |||||||||||||||||||  ||| ||||||||||| | ||||||||| |||||||    
T  35727350 aaaaaacatgtcattttataaaagttaccattgagtttctatgaatattggtatatgtgacat 35727412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 11402967 - 11403020
Alignment:
Q  24 taacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||| ||||||||||||||||||||||| |||||| ||| || ||| ||||||    
T  11402967 taacaagagaaaaaatatgtcattttatacaagtttccattgaatttatatgag 11403020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 2423178 - 2423257
Alignment:
Q  23 ttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    |||||| ||||||| |||||||| |||||||||||||  || |||||| |||||| ||| || |||||||||| |||||||    
T  2423178 ttaacaagagaaaatatatgtca-tttataaaagtttctattgagtttttatgagtatttgtctaggtgacatagatttaa 2423257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 8542030 - 8541987
Alignment:
Q  33 aaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||    
T  8542030 aaaaaatatgtcattttat-aaagttttcattgagtttctatgag 8541987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 32291183 - 32291103
Alignment:
Q  129 tgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttg 209  Q
    |||||||||||||||| ||||| || |||||| ||||||||  || || || ||| |||| |||| ||| |||||||||||    
T  32291183 tgtttattttaggttttaagttaattccttatgttttaaaaatttaaagttagtctcttacgttttaaaggttttaagttg 32291103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 32721124 - 32721088
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaa 55  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  32721124 aaacttaacaagagaaaatatatgtcattttataaaa 32721088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 47)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 13490169 - 13490283
Alignment:
Q  100 taaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaag 199  Q
    |||||||||||||||  | |||||||||||||||| ||||| ||| |||||||||| |||| ||||||||| || || || ||| |||| |||| |||||    
T  13490169 taaggcttaattgcaggtctgatctcttatgtttactttagtttttaagttgatcctttatgttttaaaagttttaagttggtctcttacgttttaaaag 13490268  T
Q  200 ttttaagttggtcca 214  Q
    |||||||||||||||    
T  13490269 ttttaagttggtcca 13490283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 13490583 - 13490476
Alignment:
Q  107 taattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaag 206  Q
    ||||||||| ||||||| ||||| |||||||||| |||||||||  || ||||| |||||||||||| || || |||||||| | || |||||||| |||    
T  13490583 taattgcatgtttgatcacttatatttattttagttttcaagttactctcttatgttttaaaagatttaagttggtcccttacgctttaaaagtttcaag 13490484  T
Q  207 ttggtcca 214  Q
    ||||||||    
T  13490483 ttggtcca 13490476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 15988675 - 15988553
Alignment:
Q  91 acattgatttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatg 190  Q
    ||||| ||| ||||||||||||||  ||||    |||||||||||||| ||||||| |||| ||| |||| ||||||||| ||||| || |||||||||     
T  15988675 acatttattaaaggcttaattgcaggtttgggtccttatgtttattttcggtttcatgttggtcc-ttatgttttaaaagtttcaagttggtcccttata 15988577  T
Q  191 tttcaaaagttttaagttggtcca 214  Q
    ||| ||||||||||||||||||||    
T  15988576 ttttaaaagttttaagttggtcca 15988553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 26845597 - 26845506
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgttt 193  Q
    ||||| |||||||| |||| || |||||||||||||||||||| |||||| |||||||| ||||||||| ||||| || |||| ||||||||    
T  26845597 aggctgaattgcatgtttggtcccttatgtttattttaggttttaagttggtcccttatgttttaaaagtttcaagttggtcctttatgttt 26845506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 32622212 - 32622283
Alignment:
Q  99 ttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| || ||||| |||||||||    
T  32622212 ttaaggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggtctcttatgttttaaaag 32622283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 39060302 - 39060405
Alignment:
Q  99 ttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaa 198  Q
    ||||||||||||||||| ||||||| |||||||||||||||| ||| |||||| ||||| || ||||||||| || || || |||||||| || | ||||    
T  39060302 ttaaggcttaattgcatgtttgatcccttatgtttattttagtttttaagttggtccctaatgttttaaaagttttaagttggtcccttacgtcttaaaa 39060401  T
Q  199 gttt 202  Q
    ||||    
T  39060402 gttt 39060405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 27957126 - 27957024
Alignment:
Q  112 gcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttggt 211  Q
    |||| ||||||||||||||||||||||||||||||||| | || ||||||||||||||| || || || |||| ||| | || ||| |||| ||||||||    
T  27957126 gcatgtttgatctcttatgtttattttaggtttcaagtaggtctcttatattttaaaagttttaacttggtccgttacgctttaaatgtttcaagttggt 27957027  T
Q  212 cca 214  Q
    |||    
T  27957026 cca 27957024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 3217271 - 3217392
Alignment:
Q  91 acattgatttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatg 190  Q
    ||||| ||| ||||||||||||||| |||| || ||| ||| ||| |||||||||| |||| |||||||| ||||||| | ||||| || |||| |||||    
T  3217271 acatttattaaaggcttaattgcatgtttggtcccttgtgtatatcttaggtttcatgttggtcccttatgttttaaaggtttcaagttggtccattatg 3217370  T
Q  191 tttcaaaagttttaagttggtc 212  Q
    ||| |||| ||| |||||||||    
T  3217371 ttttaaaattttcaagttggtc 3217392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 27956722 - 27956834
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| ||||||| |||||||||||||||| ||| || | | ||| | || ||||||||| || || || |||||||| |||| |||||||    
T  27956722 aggcttaattgcatgtttgatcccttatgtttattttagtttttaaataggtccttcatgttttaaaagttttaaattggtcccttacgttttaaaagtt 27956821  T
Q  202 ttaagttggtcca 214  Q
    | |||||||||||    
T  27956822 tcaagttggtcca 27956834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 43971928 - 43971820
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||| |||| || ||||||||||||||||||||||||||| || | | | ||||||||| ||||| || ||||||  ||||| ||||||||    
T  43971928 ggcttaattgcatgtttggtcccttatgtttattttaggtttcaagttggtcacatgtgttttaaaagtttcaagttggtccctagtgttttaaaagttt 43971829  T
Q  203 taagttggt 211  Q
     | ||||||    
T  43971828 catgttggt 43971820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 214
Target Start/End: Complemental strand, 29527007 - 29526897
Alignment:
Q  104 gcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtttt 203  Q
    ||||||||| || ||| ||| |||||||||||||||  ||| |||||| ||| |||| ||||||||| || || || |||||||| |||| ||||||||     
T  29527007 gcttaattgtatgtttaatcccttatgtttattttaatttttaagttggtccattatgttttaaaagttttaagttggtcccttacgttttaaaagtttc 29526908  T
Q  204 aagttggtcca 214  Q
    |||||||||||    
T  29526907 aagttggtcca 29526897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 1352830 - 1352939
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||| ||||||  |||||||||||||||||||| || ||| |||||| ||||||| ||  || || || ||| ||||  ||| ||||||||    
T  1352830 ggcttaattgcatgtttgattccttatgtttattttaggttttaaattggtcccttgtattttacaaattttaagttggtctcttacattttaaaagttt 1352929  T
Q  203 taagttggtc 212  Q
    ||||||||||    
T  1352930 taagttggtc 1352939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 6795583 - 6795478
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaa 205  Q
    |||||||||| ||||||| | ||| |||||||||||||| |||||| ||| |||| ||||||||| || || || |||||| | |||| |||||||| ||    
T  6795583 ttaattgcatgtttgatcccctatatttattttaggttttaagttggtccattatgttttaaaagtttaaagttggtccctaacgttttaaaagtttaaa 6795484  T
Q  206 gttggt 211  Q
    ||||||    
T  6795483 gttggt 6795478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 214
Target Start/End: Complemental strand, 32622609 - 32622492
Alignment:
Q  97 atttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaa 196  Q
    |||| ||| |||||||||| ||||||| |||||||||||||||| ||| |||||| ||| | || ||||||||| || || || |||  ||| || | ||    
T  32622609 attttaggtttaattgcatgtttgatcccttatgtttattttagtttttaagttggtccttcatgttttaaaagtttgaagttggtcttttacgtattaa 32622510  T
Q  197 aagttttaagttggtcca 214  Q
    ||||||||||||||||||    
T  32622509 aagttttaagttggtcca 32622492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 24015813 - 24015876
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    |||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||| |||||||||    
T  24015813 ttaattgcatgttt-atcccttatgtttattttagttttcaagttgatcccttatgttttaaaag 24015876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 214
Target Start/End: Complemental strand, 44995474 - 44995363
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagtt 201  Q
    |||||||||||||| ||||| | |||| ||||||||||| ||| |||||| | | | |||||||||||| ||||| || |||||||| |||| ||||||     
T  44995474 aggcttaattgcat-tttgaccccttacgtttattttagtttttaagttggtacttcatattttaaaagtttcaagttggtcccttacgttttaaaagta 44995376  T
Q  202 ttaagttggtcca 214  Q
    | |||||||||||    
T  44995375 tcaagttggtcca 44995363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 13140288 - 13140399
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    |||||| |||||| ||||||  |||||||||||||||||||| |||||| ||  |||| ||||||||| || || || ||| |||| |||| ||| ||||    
T  13140288 ggcttacttgcatgtttgatgccttatgtttattttaggttttaagttggtcttttatgttttaaaagttttaagttggtcacttacgttttaaaggttt 13140387  T
Q  203 taagttggtcca 214  Q
     |||||||||||    
T  13140388 caagttggtcca 13140399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 13194280 - 13194342
Alignment:
Q  30 gagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtga 91  Q
    |||||||||||||||||||||||||||||| ||| || |||||||||| |||||| |||||||    
T  13194280 gagaaaaaatatgtcattttataaaagtttccattgattttctatgagtattggtctaggtga 13194342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 29526591 - 29526704
Alignment:
Q  100 taaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaag 199  Q
    |||| ||||||||||| || ||||  ||||||||||||||| |||||| ||| ||||||||  ||| |||| ||||| || ||| |||| |||| |||||    
T  29526591 taagacttaattgcatgttggatcctttatgtttattttagttttcaatttggtcccttat-gtttgaaagtttcaagttggtctcttacgttttaaaag 29526689  T
Q  200 ttttaagttggtcca 214  Q
    ||| |||||||||||    
T  29526690 tttcaagttggtcca 29526704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 15320309 - 15320232
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    |||||||| || ||||||||||||| |||||||||||||||| ||| |||||||||| || || ||| ||||||||||    
T  15320309 gaaacttatcaagagaaaaaatatgccattttataaaagttttcattgagtttctataagtatgggtctaggtgacat 15320232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 31719798 - 31719722
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    |||||||||| ||||||||||||||||||||| |||||||| ||  |||||||||| || |||||| ||||| ||||    
T  31719798 aaacttaacaagagaaaaaatatgtcattttacaaaagtttccactgagtttctataagtattggtctaggtaacat 31719722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 37762415 - 37762355
Alignment:
Q  109 attgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaa 169  Q
    |||||||||||||||||||||||||||||||| |||||| ||  || ||||| ||||||||    
T  37762415 attgcatatttgatctcttatgtttattttagttttcaaattagtctcttatgttttaaaa 37762355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 22014324 - 22014382
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||| ||| |||||||||    
T  22014324 gaaacttaacaagagaaaa-atatgtcattttataaaagtttccattgagattctatgag 22014382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 38262932 - 38262841
Alignment:
Q  117 tttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagtt 208  Q
    |||| |||| ||||||||||||| |||||||| | ||| ||||| ||| ||||| ||||| || ||| ||||| ||| ||||||||||||||    
T  38262932 tttggtctcatatgtttattttaagtttcaagctaatctcttatgtttcaaaagtttcaaattagtctcttatattttaaaagttttaagtt 38262841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 1353214 - 1353144
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    ||||||| || |||| ||||| ||||||||||||||||| |||||| || ||||| ||||||||| |||||    
T  1353214 ttaattgtatgtttggtctctcatgtttattttaggttttaagttggtctcttatgttttaaaagtttcaa 1353144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 14473503 - 14473585
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcc 184  Q
    |||||||||||||| |||| || ||| ||||||||||| ||||  ||||| |||||||| ||||||||| || || |||||||    
T  14473503 aggcttaattgcatgtttggtcgcttttgtttattttaagttttgagttggtcccttatgttttaaaagttttaagtttgtcc 14473585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 27898698 - 27898756
Alignment:
Q  20 aacttaacatgagaaaa-aatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    ||||||||| ||||||| ||||||| ||||||||||||||| ||| |||||||||||||    
T  27898698 aacttaacacgagaaaaaaatatgtaattttataaaagttttcattgagtttctatgag 27898756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 3217571 - 3217502
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    ||||||||||||||| ||||  | ||| ||||||||| ||||||||||||| |||| ||| |||||||||    
T  3217571 aaggcttaattgcatgtttgtccccttgtgtttatttcaggtttcaagttggtcccctatgttttaaaag 3217502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 13140677 - 13140604
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    ||||||||||||| |||| || ||| |||||||||||| ||| |||||| ||  |||||||||||||| |||||    
T  13140677 ggcttaattgcatgtttggtcccttgtgtttattttagattttaagttggtcatttatattttaaaagtttcaa 13140604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 17763110 - 17763151
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagttt 59  Q
    ||||||||||| |||||||||||||||||||| |||||||||    
T  17763110 gaaacttaacaagagaaaaaatatgtcattttgtaaaagttt 17763151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 24284189 - 24284108
Alignment:
Q  128 atgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttttaagttg 209  Q
    |||||||||||||||| ||| ||| |||||||| ||||||||| || || |||| | ||||| ||| |||||||| ||||||    
T  24284189 atgtttattttaggttacaaattggtcccttatgttttaaaagttttaagtttgactcttatattttaaaagtttcaagttg 24284108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 41166518 - 41166595
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatg-agattggtataggtgacat 94  Q
    ||||||||||| ||||||||| ||||||||||||||||   | ||| ||||||||||| | |||||| ||||||||||    
T  41166518 gaaacttaacaagagaaaaaacatgtcattttataaaaaaattcattgagtttctatgaatattggtctaggtgacat 41166595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 43513973 - 43513916
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttat 160  Q
    |||||| |||||| ||||||| ||||||||||| ||||||||||||||| || |||||    
T  43513973 ggcttacttgcatgtttgatcccttatgtttatattaggtttcaagttggtctcttat 43513916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 14424237 - 14424285
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttg 151  Q
    ||||||||||||| |||   |||||||||||||||||||||||||||||    
T  14424237 ggcttaattgcatgtttagcctcttatgtttattttaggtttcaagttg 14424285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 6412463 - 6412573
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||| |  | |||||||||||||||| |||||| ||||||  || ||| | |||||||| || || || | ||||||||||| || |||||    
T  6412463 ggcttaattgcatgtgcggtctcttatgtttatttcaggttttaagttggacctttaca-tttaaaagttttaaattggacccttatgttttaagagttt 6412561  T
Q  203 taagttggtcca 214  Q
     |||||||||||    
T  6412562 caagttggtcca 6412573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 10242457 - 10242410
Alignment:
Q  30 gagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag 77  Q
    |||||||||||| |||||||||||||||||  || |||||||||||||    
T  10242457 gagaaaaaatatatcattttataaaagtttcaattgagtttctatgag 10242410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 34572667 - 34572612
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttcta 73  Q
    ||||||||||| |||||||||||||||||| |||| ||||| ||||  ||||||||    
T  34572667 gaaacttaacaagagaaaaaatatgtcattctatacaagttcacattaagtttcta 34572612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 36500335 - 36500264
Alignment:
Q  30 gagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgattt 100  Q
    ||||| ||||||| |||||||||||||||| ||| |||||||||| || ||| || |||||||||| |||||    
T  36500335 gagaacaaatatgccattttataaaagttttcattgagtttctattagtattagtctaggtgacatcgattt 36500264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 36964352 - 36964387
Alignment:
Q  20 aacttaacatgagaaaaaatatgtcattttataaaa 55  Q
    ||||||||| ||||||||||||||||||||||||||    
T  36964352 aacttaacaagagaaaaaatatgtcattttataaaa 36964387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 12041295 - 12041225
Alignment:
Q  33 aaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatttaa 102  Q
    ||||||| |||| |||||||||||||| ||| ||||||||||||| | |||| ||| |||||| |||||||    
T  12041295 aaaaaatttgtcgttttataaaagttttcattgagtttctatgagtaatggtctagatgacatagatttaa 12041225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 43971650 - 43971692
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggttt 144  Q
    |||||||| ||||| ||||||| ||||||||||||||||||||    
T  43971650 aggcttaaatgcatgtttgatcccttatgtttattttaggttt 43971692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 6795193 - 6795246
Alignment:
Q  117 tttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    ||||||||||||| |||||||||| ||| |||||| | | ||||||||||||||    
T  6795193 tttgatctcttatatttattttagtttttaagttggttctttatattttaaaag 6795246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 14473922 - 14473877
Alignment:
Q  125 cttatgtttattttaggtttcaagttgatcccttatattttaaaag 170  Q
    |||| |||||||||||||||||||| | |||||||| |||||||||    
T  14473922 cttacgtttattttaggtttcaagtaggtcccttatgttttaaaag 14473877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 27301207 - 27301134
Alignment:
Q  22 cttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||| |||| ||||||||| ||||| ||| ||||| ||| ||||||||||||| |||| | ||||||||||    
T  27301207 cttaacaagagagaaaatatgtaattttttaatagtttccatggagtttctatgagtattgatctaggtgacat 27301134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 11678377 - 11678417
Alignment:
Q  34 aaaaatatgtcattttataaaagtttacatcgagtttctat 74  Q
    |||||||||||||||||| ||||||| ||| ||||||||||    
T  11678377 aaaaatatgtcattttattaaagtttgcattgagtttctat 11678417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 11695855 - 11695895
Alignment:
Q  34 aaaaatatgtcattttataaaagtttacatcgagtttctat 74  Q
    |||||||||||||||||| ||||||| ||| ||||||||||    
T  11695855 aaaaatatgtcattttattaaagtttgcattgagtttctat 11695895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 44085866 - 44085894
Alignment:
Q  31 agaaaaaatatgtcattttataaaagttt 59  Q
    |||||||||||||||||||||||||||||    
T  44085866 agaaaaaatatgtcattttataaaagttt 44085894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 26229 - 26311
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacattgatt 99  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||||||| ||||    
T  26229 gaaacttaacaatagaaaaaatatgtcattttataaaagtttccattgagtttctatgagtattggtctaggtgacatagatt 26311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 14889 - 14929
Alignment:
Q  19 aaacttaacatgagaaaaaatatgtcattttataaaagttt 59  Q
    |||||||||| |||||||||||| || ||||||||||||||    
T  14889 aaacttaacaagagaaaaaatatatctttttataaaagttt 14929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 9986 - 9914
Alignment:
Q  104 gcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||| || ||||| ||||||||| |||||    
T  9986 gcttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttttaaaagtttcaa 9914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 9576 - 9667
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgttt 193  Q
    |||||||||| ||| |||||||||||||||||||||||  ||| ||| || |||||||| ||||||||| ||||| || |||||||| ||||    
T  9576 aggcttaattccatgtttgatctcttatgtttattttaatttttaagatggtcccttatgttttaaaagtttcaaattggtcccttacgttt 9667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 10629 - 10557
Alignment:
Q  104 gcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||| || ||||| ||||||||| |||||    
T  10629 gcttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttttaaaagtttcaa 10557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 10219 - 10310
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgttt 193  Q
    |||||||||| ||| |||||||||||||||||||||||  ||| ||| || |||||||| ||||||||| ||||| || |||||||| ||||    
T  10219 aggcttaattccatgtttgatctcttatgtttattttaatttttaagatggtcccttatgttttaaaagtttcaaattggtcccttacgttt 10310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 62722 - 62835
Alignment:
Q  101 aaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagt 200  Q
    |||||||||||||||  |||||| ||||| ||||||| |  |||||||||| || | ||| ||||||||| ||||| ||  ||||||| |||| ||||||    
T  62722 aaggcttaattgcatgcttgatcccttatatttatttcaattttcaagttggtctcgtatgttttaaaagtttcaagttaatcccttacgttttaaaagt 62821  T
Q  201 tttaagttggtcca 214  Q
    ||||||||||||||    
T  62822 tttaagttggtcca 62835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 63138 - 63027
Alignment:
Q  103 ggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaattttgtcccttatgtttcaaaagttt 202  Q
    ||||||||||||| ||||||| |||||||||||||||| ||| || ||| ||| | || ||||||||| ||||| || ||||||||  ||| ||||||||    
T  63138 ggcttaattgcatgtttgatcccttatgtttattttagtttttaaattggtccttcatgttttaaaagtttcaagttggtcccttacattttaaaagttt 63039  T
Q  203 taagttggtcca 214  Q
     | |||||||||    
T  63038 caggttggtcca 63027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 29607 - 29674
Alignment:
Q  102 aggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaa 169  Q
    |||||||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||  ||||||||    
T  29607 aggcttaattacatgtttgatctcttatgtttattttagttttcaagttgatctcttacgttttaaaa 29674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 47496 - 47417
Alignment:
Q  97 atttaaggcttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttatattttaaaagattcaa 176  Q
    |||| |||||||||||||| |||| || |||||||||||||||||||| |||||| || ||||| ||||||||| |||||    
T  47496 attttaggcttaattgcatgtttggtcccttatgtttattttaggttttaagttggtcgcttatgttttaaaagtttcaa 47417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 47291 - 47345
Alignment:
Q  106 ttaattgcatatttgatctcttatgtttattttaggtttcaagttgatcccttat 160  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||| ||||||||    
T  47291 ttaattgcatgtttgatctctaatgtttattttagatttcaagttggtcccttat 47345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 6345 - 6422
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||||||| ||||||||||||||||| ||||| |||||| |||  |||||||||||| |||||| ||||||||||    
T  6345 gaaacttaacaagagaaaaaatatgtcatgttatagaagttttcattaagtttctatgagtattggtttaggtgacat 6422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 428009 - 428086
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatgag-attggtataggtgacat 94  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||  ||||| |||||| || |||||||    
T  428009 gaaacttaacaagagaaaaaatatgtcattttataaaagttttcattgagttttaatgagtattggtttatgtgacat 428086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 1537 - 1589
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagttt 70  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  1537 gaaacttaacaagagaaaaaatatgtcattttataaaagttttcattgagttt 1589  T

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Target: scaffold0688; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 8106 - 8158
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagttt 70  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||    
T  8106 gaaacttaacaagagaaaaaatatgtcattttataaaagttttcattgagttt 8158  T

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Target: scaffold0688; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 3131 - 3182
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagttt 70  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||| ||||||    
T  3131 gaaacttaacaagagaaaa-atatgtcattttataaaagttttcattgagttt 3182  T

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Target: scaffold0688; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 4798 - 4849
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagttt 70  Q
    ||||||||||| ||||||| |||||||||||||||||||||| ||| ||||||    
T  4798 gaaacttaacaagagaaaa-atatgtcattttataaaagttttcattgagttt 4849  T

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Target: scaffold0210 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 20351 - 20259
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatg-agattggtataggtgacattgatttaaggcttaa 109  Q
    ||||||||||   ||||||||||| ||||||||| |||| |||||| ||||||| ||| | |||||| ||| ||| ||  |||||||||||||    
T  20351 gaaacttaactaaagaaaaaatatatcattttattaaaggttacattgagtttccatgaatattggtttagatgatatatatttaaggcttaa 20259  T

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Target: scaffold0210; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 28243 - 28151
Alignment:
Q  18 gaaacttaacatgagaaaaaatatgtcattttataaaagtttacatcgagtttctatg-agattggtataggtgacattgatttaaggcttaa 109  Q
    ||||||||||   ||||||||||| ||||||||| |||| |||||| ||||||| ||| | |||||| ||| ||| ||  |||||||||||||    
T  28243 gaaacttaactaaagaaaaaatatatcattttattaaaggttacattgagtttccatgaatattggtttagatgatatatatttaaggcttaa 28151  T

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