View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16605_high_1 (Length: 754)

Name: NF16605_high_1
Description: NF16605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16605_high_1
NF16605_high_1
[»] chr3 (1 HSPs)
chr3 (1-736)||(52289568-52290303)


Alignment Details
Target: chr3 (Bit Score: 720; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 1 - 736
Target Start/End: Complemental strand, 52290303 - 52289568
Alignment:
Q  1 agtgaaatccaaaggccggaaaagtacatccgacgttccttcaagaagaagtgagtttctaattgataaaatcaatgaagaggaaagtgaatcgttgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52290303 agtgaaatccaaaggccggaaaagtacatccgacgttccttcaagaagaagtgagtttctaattgataaaatcaatgaagaggaaagtgaatcgttgatt 52290204  T
Q  101 tcttgcttagcaagattctcggaagacgagaaggtccattcgtctagtactatggacagtaaagttaaggctatctcaaattttagtgataaaaaggaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52290203 tcttgcttagcaagattctcggaagacgagaaggtccattcgtctagtactatggacagtaaagttaaggctatctcaaattttagtgataaaaaggaga 52290104  T
Q  201 atagagatttaactagcgcaaatagaaggacgctaagtcgtgtaaagaaggttgagagagtgaggtttcaaagtattacagagaatcaaagaggaaaaga 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52290103 ataaagatttaactagcgcaaatagaaggacgctaagtcgtgtaaagaaggttgagagagtgaggtttcaaagtattacagagaatcaaagaggaaaaga 52290004  T
Q  301 aacgaaggttatgtcaagtagaatggaagagaatcgaagaggaaccgaaacgaaggttatgtcatgtagaatggaggagaaggtaaaagaaagctttgct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52290003 aacgaaggttatgtcaagtagaatggaagagaatcgaagaggaaccgaaacgaaggttatgtcaagtagaatggaggagaaggtaaaagaaagctttgct 52289904  T
Q  401 ttggtgaaaaagtcaaaggatccttacgaagacttcaagaaatcaatgttagagatgatagaagagatggaaatgtccgaagccaaggacttggagcaac 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52289903 ttggtgaaaaagtcaaaggatccttacgaagacttcaagaaatcaatgttagagatgatagaagagatggaaatgtctgaagccaaggacttggagcaac 52289804  T
Q  501 tattgcagtgttttttggctctgaattctagagattatcatggagtaattgtgcgagctttcatggagatttggcaacaaatgttcgtttggaatcctaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52289803 tattgcagtgttttttggctctgaattctagagattatcatggagtaattgtgcgagctttcatggagatttggcaacaaatgttcgtttggaatcctaa 52289704  T
Q  601 gtcgattacaaatcttcaaacaagtgttcaaactaaggatgtgaaattgtagattacaaagaattttagcaattttgtttgtcttttccttttgatatct 700  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52289703 gtcgattacaaatcttcaaacaagtgttcaaactaaggatgtggaattgtagattacaaagaattttagcaattttgtttgtcttttccttttgatatct 52289604  T
Q  701 tgtgtgtgtgagatatagacttgtatggtatgcatt 736  Q
    ||||||||||||||||||||||||||||||||||||    
T  52289603 tgtgtgtgtgagatatagacttgtatggtatgcatt 52289568  T

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