View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16605_high_4 (Length: 274)
Name: NF16605_high_4
Description: NF16605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16605_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 29778504 - 29778598
Alignment:
| Q |
140 |
actcacttcccaaccattgaacgcatattgccgacaattttgtgctcgatttctaatttttattttctccattattgttgttgtttaagaataat |
234 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29778504 |
actcgcttcccaaccattgaacgcatattgctgaaaattttgtgctcgatttctaatttttattttctccattattgttgttgtttaagaataat |
29778598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29778365 - 29778441
Alignment:
| Q |
1 |
ttgccacccaccaccgttggtatctccgttccattctcctccaaaatttggtacccatttaccaatttcattcaaag |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29778365 |
ttgccacccaccaccgttggtatctccgttccattctcctccaaaatttggtacccatttaccaatttcattcaaag |
29778441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University