View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16605_low_2 (Length: 485)
Name: NF16605_low_2
Description: NF16605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16605_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 33 - 465
Target Start/End: Original strand, 43636173 - 43636606
Alignment:
| Q |
33 |
cagtaacatgtctagttttttatgagttacaatatctttcacctttgtctaatctagccaaccaaaacatgacatgatctatatcaaacttgtttacaaa |
132 |
Q |
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| T |
43636173 |
cagtaacatgtctagttttttatgagttacaatatctttcacctttgtctaatctagccaaccaaaacatgacatgatctatatcaaacttgtttatcaa |
43636272 |
T |
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| Q |
133 |
catgttccatgatttagttgattatgaaatgaacaaaa-atgactcnnnnnnnctaaacagaacagaactaagcaattgtaaaatctaaaaacaataaga |
231 |
Q |
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| T |
43636273 |
catgttccatgatttagttgattatgcaatgaacaaaagattactcaaaaaaactaaacagaacagaactaagcaattgtaaaatctaaaaacaataaga |
43636372 |
T |
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| Q |
232 |
aggatgatgtaaataaacatactttgcagcaggagcattagcatgctcatttgttccagaaacctgtttattcttttcatgtacagattgatgaagaacc |
331 |
Q |
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| T |
43636373 |
aggatgatgtaaataaacatactttgcagcaggagcattagcatgctcatttgttccagaaacctgtttattcttttcatgtacagattgatgaagaacc |
43636472 |
T |
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| Q |
332 |
tctttgatgttttttgttgcatttgtattaatcttttgaatattagtttgagtctctaaaccagcaagaggttttccaacattccctcctcttggcgaga |
431 |
Q |
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| T |
43636473 |
tctttgatgttttttgttgcatttgtattaatcttttgaatattagtttgagtctctaaaccagcaagaggttttccaacattccctcctcttggcgaga |
43636572 |
T |
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| Q |
432 |
acaaactacctccttcagatccatcattcataga |
465 |
Q |
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| T |
43636573 |
acaaactacctccttcagatccatcattcataga |
43636606 |
T |
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