View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16605_low_3 (Length: 340)
Name: NF16605_low_3
Description: NF16605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16605_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 28 - 326
Target Start/End: Original strand, 23346870 - 23347167
Alignment:
| Q |
28 |
tagttagtggaatggaatagtaccctccatatagtagaatttttggattcattatcaatttggcacgtatggacagaatttttctgttattctatctttt |
127 |
Q |
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| T |
23346870 |
tagttagtggaatggaatagtaccctccatatagtagaatttttggattcattatcaatttggcacgtatagacagaatttttctgttattctatctttt |
23346969 |
T |
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| Q |
128 |
atttgggctatgatacgtttgtcacagttaatcaatgatatctatcctttcggaattacaagtgttctcttttaggtgacttagatgagaggtagcctaa |
227 |
Q |
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| T |
23346970 |
atttgggccatgatacgtttgtcacagttaatcaatgatatctatcatttcggaattacaagttttctcttttaggtgactgagatgagaggtagcctaa |
23347069 |
T |
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| Q |
228 |
ttactaagcagattagtagaatgcaacatgacagaatatgttgaacttataccctaattgctgtgttaaaaacaattatagatattctgtaagtataat |
326 |
Q |
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| T |
23347070 |
ttactaagcagattagtagaatgcaacatgacagaatatgttgaacttataccctaattgc-gtgttaaaaacaattatagatattctgtaagtataat |
23347167 |
T |
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