View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16605_low_6 (Length: 231)
Name: NF16605_low_6
Description: NF16605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16605_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 7120265 - 7120053
Alignment:
| Q |
1 |
ttatttggtgatc-aacaatgctttgaaattgggatgtgtatctgaaacactcaaggtcagtttgtgaaagctctaactaaatggtttgagtgttatcca |
99 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7120265 |
ttatttggtgatccaacaatgctttgaaattgggatgtgtatctgaaacactcaaggtcagtttgtgaaagctctaactaaatggcttgagtgttatcca |
7120166 |
T |
|
| Q |
100 |
agtccattggaggcagaggcatttggattaagggaaactatatcttggcttggggaactaggattatcaatggtgcaaattgagctagatggaaagctag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7120165 |
agtccattggaggcagaggcatttggattaagggaagctatatcttggcttggggaactaggattatcaatggtgcaaattgagctagaaggaaagctag |
7120066 |
T |
|
| Q |
200 |
tgatggaaggtat |
212 |
Q |
| |
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|| |||||||||| |
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| T |
7120065 |
tggtggaaggtat |
7120053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 43391452 - 43391245
Alignment:
| Q |
1 |
ttatttggtgatcaacaatgctttgaaattgggatgtgtatctgaaacactcaaggtcagtttgtgaaagctctaactaaatggtttgagtgttatccaa |
100 |
Q |
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||||||||||||||||||||||||||||| | |||||||||| |||||||| ||||||||||||||||||| ||||||||| |||| ||||||||| || |
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| T |
43391452 |
ttatttggtgatcaacaatgctttgaaatcgagatgtgtatccgaaacacttaaggtcagtttgtgaaagcattaactaaatagttttagtgttatctaa |
43391353 |
T |
|
| Q |
101 |
gtccattggaggcagaggcatttggattaagggaaactatatcttggcttggggaactaggattatcaatggtgcaaattgagctagatggaaagctagt |
200 |
Q |
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| T |
43391352 |
gtccattggaagcggaggcattgggactaagggagactatatcttggtttggggaactaggattattaatggtgtaaattgagctggattacaagctagt |
43391253 |
T |
|
| Q |
201 |
gatggaag |
208 |
Q |
| |
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| |||||| |
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| T |
43391252 |
ggtggaag |
43391245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 9179061 - 9178991
Alignment:
| Q |
138 |
tatatcttggcttggggaactaggattatcaatggtgcaaattgagctagatggaaagctagtgatggaag |
208 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||| | ||||| ||| |||||| |
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| T |
9179061 |
tatatcttggcttggggaattaggattatcaatggtgtaaattgagctagattgtaagctggtggtggaag |
9178991 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 11356028 - 11356233
Alignment:
| Q |
2 |
tatttggtgatcaacaatgctttgaaattgggatgtgtatctgaaacactcaaggtcagtttgtgaaagctctaactaaatggtttgagtgttatccaag |
101 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||| |||| ||| |||||||| ||| | |||||| |||| |||||||||||||||||||| | |
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| T |
11356028 |
tatttggtgatcaacaatgctttggtgttggaatgtgcatctagaacgctcaaggttgttttctaaaagctttaacgaaatggtttgagtgttatcctac |
11356127 |
T |
|
| Q |
102 |
tccattggaggcagaggcatttggattaagggaaactatatcttggcttggggaactaggattatcaatggtgcaaattgagctagatggaaagctagtg |
201 |
Q |
| |
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|||| | || ||||||||| | | ||||| |||| ||||| || |||| ||| ||||| ||||||||||||||||| | |||||| | ||||||||| |
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| T |
11356128 |
tccactagaagcagaggcactagaattaaaggaagttatatactgacttgcagaattaggactatcaatggtgcaaattaaactagattgtaagctagtg |
11356227 |
T |
|
| Q |
202 |
atggaa |
207 |
Q |
| |
|
|||||| |
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|
| T |
11356228 |
atggaa |
11356233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 2704297 - 2704158
Alignment:
| Q |
67 |
aaagctctaactaaatggtttgagtgttatccaagtccattggaggcagaggcatttggattaagggaaactatatcttggcttggggaactaggattat |
166 |
Q |
| |
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|||||| |||| ||||||||||| | ||||| | |||||| || |||||||| || || |||| ||| |||||| ||||||||| ||| |||| || | |
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| T |
2704297 |
aaagctttaacaaaatggtttgactactatcctactccattagaagcagaggctttgggtttaaaggatactatagtttggcttggtgaattaggtttgt |
2704198 |
T |
|
| Q |
167 |
caatggtgcaaattgagctagatggaaagctagtgatgga |
206 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| |||| |
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| T |
2704197 |
caatggtgcaaattgagctagattgtaagctagtggtgga |
2704158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 35652979 - 35653160
Alignment:
| Q |
1 |
ttatttggtgatcaacaatgctttgaaattgggatgtgtatctgaaacactcaaggtcagtttgtgaaagctctaactaaatggtttgagtgttatccaa |
100 |
Q |
| |
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||||||||||| |||||||| ||| ||| |||||||| ||||| ||||||||||| ||||||||||| || || ||||||| |||||| ||||| |
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| T |
35652979 |
ttatttggtgactaacaatgcattgtaatcaaaatgtgtatttgaaatgctcaaggtcagattgtgaaagctttacctgaatggttcaagtgttgtccaa |
35653078 |
T |
|
| Q |
101 |
gtccattggaggcagaggcatttggattaagggaaactatatcttggcttggggaactaggattatcaatggtgcaaattga |
182 |
Q |
| |
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| ||| ||| |||||||| || |||| ||||| |||| |||| |||||||| |||||||||||||| |||||||||| |
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| T |
35653079 |
cttcatcggaagcagaggcgttgagattgagggaggtcatattttgggttggggaaataggattatcaatgctgcaaattga |
35653160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 4097626 - 4097750
Alignment:
| Q |
82 |
tggtttgagtgttatccaagtccattggaggcagaggcatttggattaagggaaactatatcttggcttggggaactaggattatcaatggtgcaaattg |
181 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||||| ||||||||||| ||||||||| | || ||||| || ||||||||||||||||||| | |
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| T |
4097626 |
tggtttgagtgttatccctctccatcggaagcagaggcattgggattaagggaggctatatcttagttttgggaattatgattatcaatggtgcaaatag |
4097725 |
T |
|
| Q |
182 |
agctagatggaaagctagtgatgga |
206 |
Q |
| |
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|||||||| | ||| ||||| |||| |
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| T |
4097726 |
agctagattgcaagttagtggtgga |
4097750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 47432362 - 47432291
Alignment:
| Q |
137 |
ctatatcttggcttggggaactaggattatcaatggtgcaaattgagctagatggaaagctagtgatggaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| | ||||||| | ||||||||| |||||| |
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|
| T |
47432362 |
ctatatcttggcttggggaactaggattatcaatagtgcaaatagtgctagattgcaagctagtggtggaag |
47432291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 19596157 - 19596253
Alignment:
| Q |
112 |
gcagaggcatttggattaagggaaactatatcttggcttggggaactaggattatcaatggtgcaaattgagctagatggaaagctagtgatggaag |
208 |
Q |
| |
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||||| ||||| ||||||||||| |||| |||||||||||||| |||||||||| ||| |||||||||||| |||| ||||||||| |||||| |
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| T |
19596157 |
gcagaagcattgggattaagggagggtataacttggcttggggaattaggattatccatgatgcaaattgagccagattagaagctagtggtggaag |
19596253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 19751241 - 19751169
Alignment:
| Q |
112 |
gcagaggcatttggattaagggaaactatatcttggcttggggaactaggattatcaatggtgcaaattgagc |
184 |
Q |
| |
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||||| ||||| ||||||||||| |||| |||||||||||||| |||||||| | || ||||||||||||| |
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| T |
19751241 |
gcagaagcattgggattaagggagggtataacttggcttggggaattaggattacccatcgtgcaaattgagc |
19751169 |
T |
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