View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16606_high_1 (Length: 782)
Name: NF16606_high_1
Description: NF16606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16606_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 13 - 768
Target Start/End: Complemental strand, 16962041 - 16961284
Alignment:
| Q |
13 |
atcatcataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaacattaagattgagaacattttgttggaca |
112 |
Q |
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| T |
16962041 |
atcatcataggcattgctagaggaattcaattcttacatacaggagttaatcctggcatatatggaaacaacataaagattgagaacattttgttggaca |
16961942 |
T |
|
| Q |
113 |
ataatctcaatccaaaagttagtggatatagcattccattaattccatgcaaggttagaagaacaaattatatgtaatttcactcattcagtacttcatg |
212 |
Q |
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| T |
16961941 |
ataatctcaatccaaaagttagtggatatagcattccattaattccatccaaggttagaagaacaaattatatgtaatttcactcattcagtacttcatg |
16961842 |
T |
|
| Q |
213 |
tttaagtctctaactctaatctatgatattttacttttcttattttcatttttcagaaaggttctgacagaaaacttaaagaacaaaatgcacacaatca |
312 |
Q |
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| T |
16961841 |
tttaagtctctaactctaatctatgatattttacttttcttattttcatttttcagaaaggttctgacagaaaacttaaagaacaaaatgcacacaatca |
16961742 |
T |
|
| Q |
313 |
tattggcaggtaattttcatctgagaaaagagacattcattgctagtgtaaaatatttttacactgatgtcttataagaatattatgttatcccaatgtg |
412 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16961741 |
tattggcaggtaactttcatctgagaaaagagacattcattgctagtgtaaaatatttttacactgatgtcttataagaatatgatgttatcccaatgtg |
16961642 |
T |
|
| Q |
413 |
cagcatcaatagtgcagaaaaggaagacatatatcaatttggtgtaattctacttgaagttatcactggcaaactaatttcatcttctattgaagtagag |
512 |
Q |
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| T |
16961641 |
cagcatcaatagtgcagaaaaggaagacatatatcaatttggtgtaattctacttgaagttatcactggcaaactaattacatcttctattgaagtagag |
16961542 |
T |
|
| Q |
513 |
gtgctgaagtatgaggtatacatg-catatcattcttacaaatcataaggttcactgatatacatgacatagt-aattacatgtttgatttgatttactt |
610 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16961541 |
gtgctgaagtatgaggtatacatgacatatcattcttacaaatcataaggttcactgatatacatgacatagtaaattacatgtttgatttgatttactt |
16961442 |
T |
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| Q |
611 |
aacttgaattttctcattataatgttcagctagagagaggtttatctgaagttgcatcaccaatcgcgttaaagagcgcaatcgatccttccctccatgg |
710 |
Q |
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| T |
16961441 |
aacttgaattttctcattatcatgttcagcttgagagaggtttatctgaagttgcatcaccgatcgcgttaaagagcgcaattgatccttccctccatgg |
16961342 |
T |
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| Q |
711 |
aacttatacacatgaatcattgaagactgtagttcagatcaccatcaattgtctcaac |
768 |
Q |
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| T |
16961341 |
aacttatacacatgaatcattgaagactgcagttcagctcaccatcaattgtctcaac |
16961284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 24827682 - 24827821
Alignment:
| Q |
13 |
atcatcataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaacattaagattgagaacattttgttggaca |
112 |
Q |
| |
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|||| |||||| ||||| |||||| |||| ||| |||||||||||||| |||||| |||| ||| ||||| | ||||||||||| |||||||| || |
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| T |
24827682 |
atcagcataggaattgcaagaggagttcagttcttacatacaggagttgctcctggaatatttggcaacaatttcaagattgagaatattttgttagatg |
24827781 |
T |
|
| Q |
113 |
ataatctcaatccaaaagttagtggatatagcattccatt |
152 |
Q |
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||| ||| ||| |||||||||||||||| || |||||||| |
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| T |
24827782 |
atagtcttaatgcaaaagttagtggatacagaattccatt |
24827821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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