View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16606_high_2 (Length: 348)
Name: NF16606_high_2
Description: NF16606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16606_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 6018878 - 6018538
Alignment:
| Q |
1 |
aataagaaaaataatagactcttgagatgaacaaatacacattttttgaaaacaacgaaaatgtataaaagttgttttcatgatttccaaaaatgtataa |
100 |
Q |
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| T |
6018878 |
aataagaaaaataatagactcttgagatgaacaaatacacattttttgaaaacaacgaaaatgtataaaagttgttttcatgatttccaaaaatgtataa |
6018779 |
T |
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| Q |
101 |
tctatcactaactagtagtatttcattttcaagactttcacatcttctaattatagtaagtaagttaaaatgagcatatattttagtaaatgttttcaca |
200 |
Q |
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| T |
6018778 |
tctatcactaactagtagtatttcattttcaagactttcacatcttctaattatagtaagtaagttaaaatgagcatatattttagtaaatgttttcaca |
6018679 |
T |
|
| Q |
201 |
aactnnnnnnntcttaactaattagtaaaacatttgatttttcatccttcatcaaactagattagtttgacaaaagaaataaacgaaaatgttagttaga |
300 |
Q |
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| T |
6018678 |
aactaaaaaaatcttaactaattagtaaaacatttgatttttcatccttcatcaaactagattagtttgacaaaagaaataaacgaaaatgttagttaga |
6018579 |
T |
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| Q |
301 |
tgtgtaatgattataattcatgagcaagaataatctaccca |
341 |
Q |
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| T |
6018578 |
tgtgtaatgattataattcatgagcaagaaaaatttaccca |
6018538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 31671699 - 31671739
Alignment:
| Q |
162 |
aagttaaaatgagcatatattttagtaaatgttttcacaaa |
202 |
Q |
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| T |
31671699 |
aagttaaaatgaacatatattttagaaaatgttttcacaaa |
31671739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 31906012 - 31905972
Alignment:
| Q |
162 |
aagttaaaatgagcatatattttagtaaatgttttcacaaa |
202 |
Q |
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| T |
31906012 |
aagttaaaatgaacatatattttagaaaatgttttcacaaa |
31905972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 31923940 - 31923900
Alignment:
| Q |
162 |
aagttaaaatgagcatatattttagtaaatgttttcacaaa |
202 |
Q |
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| T |
31923940 |
aagttaaaatgaacatatattttagaaaatgttttcacaaa |
31923900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 25144735 - 25144787
Alignment:
| Q |
50 |
aaacaacgaaaatgtataaaagttgttttcatgatttccaaaaatgtataatc |
102 |
Q |
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|||||| ||||||| |||| ||||||||||||||| ||||||||||||||| |
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| T |
25144735 |
aaacaatgaaaatggcaaaaacttgttttcatgattttcaaaaatgtataatc |
25144787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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