View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16606_low_4 (Length: 301)

Name: NF16606_low_4
Description: NF16606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16606_low_4
NF16606_low_4
[»] chr8 (2 HSPs)
chr8 (1-285)||(3780112-3780396)
chr8 (163-285)||(4076859-4076981)
[»] chr5 (6 HSPs)
chr5 (165-285)||(25955877-25955997)
chr5 (167-285)||(1501287-1501406)
chr5 (165-265)||(38280190-38280290)
chr5 (165-265)||(42250198-42250298)
chr5 (171-259)||(7886443-7886530)
chr5 (167-215)||(38951522-38951570)
[»] chr4 (3 HSPs)
chr4 (165-285)||(52055065-52055185)
chr4 (165-265)||(49866732-49866821)
chr4 (215-265)||(1158222-1158272)
[»] chr7 (12 HSPs)
chr7 (165-285)||(2286520-2286640)
chr7 (167-265)||(40855070-40855168)
chr7 (164-265)||(11765789-11765890)
chr7 (165-265)||(496765-496865)
chr7 (165-265)||(23844717-23844817)
chr7 (165-285)||(7527181-7527301)
chr7 (165-265)||(42535132-42535231)
chr7 (204-265)||(48057655-48057716)
chr7 (193-285)||(25185878-25185970)
chr7 (167-212)||(31427170-31427215)
chr7 (217-265)||(4649281-4649329)
chr7 (231-272)||(31427243-31427284)
[»] chr6 (1 HSPs)
chr6 (165-285)||(33594436-33594556)
[»] chr2 (2 HSPs)
chr2 (163-265)||(11829039-11829141)
chr2 (165-265)||(13922267-13922367)
[»] chr3 (4 HSPs)
chr3 (175-285)||(47940888-47940998)
chr3 (167-265)||(49786475-49786573)
chr3 (165-265)||(8436813-8436913)
chr3 (198-285)||(8153041-8153128)
[»] chr1 (5 HSPs)
chr1 (167-265)||(20186760-20186858)
chr1 (165-265)||(30339718-30339818)
chr1 (164-265)||(51787354-51787454)
chr1 (165-257)||(9672889-9672981)
chr1 (165-209)||(43740309-43740352)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 3780112 - 3780396
Alignment:
Q  1 cagttatacttttttattcaatcggaaatcaatgatccacgcaacctggttgttttctctgcatatcacgtttgcctttgagatagtcagagttctagaa 100  Q
    |||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3780112 cagttatacttttttattcaatcgaaaatcaatgatctacacaacctggttgttttctctgcatatcacgtttgcctttgagatagtcagagttctagaa 3780211  T
Q  101 ggttggtgttgccgggaaaataatggacaaaagttaaaaatggaaagtgcatgatggtgtggtgggaaaatgattggtagaccactcatattttcatacc 200  Q
    |||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3780212 ggttggtgttgccgggaaaataatggacaagagaaaaaaatggaaagtgcatgatggtgtggtgggaaaatgattggtagaccactcatattttcatacc 3780311  T
Q  201 atccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctggagtttaggctacatgt 285  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  3780312 acccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctcgggtttaggctacatgt 3780396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 4076859 - 4076981
Alignment:
Q  163 tgggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtg 262  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||| | || |||||||||||| |||||||||||||| |||||||||||||| ||    
T  4076859 tgggaaaatgattggtagaccactcataatttcataccacccatacacctccacttatttgagaggagagagatggatgaaaaggaagagagacaaattg 4076958  T
Q  263 tttctggagtttaggctacatgt 285  Q
    ||| ||| || ||||||||||||    
T  4076959 tttgtggggtctaggctacatgt 4076981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 165 - 285
Target Start/End: Original strand, 25955877 - 25955997
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    |||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  25955877 ggaaaatgattggtagaccactcataatttcatatcacccatacacccctacatatttgagaggagagagatggatgaaaaggaagagagacaaagtgtt 25955976  T
Q  265 tctggagtttaggctacatgt 285  Q
    | ||| || ||||| ||||||    
T  25955977 tgtggggtctaggccacatgt 25955997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 1501287 - 1501406
Alignment:
Q  167 aaaatgattggtagaccactcatattttcataccatccatacacccct-acatatttgagaggaaagagatggatgaaagggaagagagacaaagtgttt 265  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||||||||| |    
T  1501287 aaaatgattggtagaccactcatattttcataccacacatacaccccccacatatttgagaggagagagatggatgaaagagaagagagacaaagtgtat 1501386  T
Q  266 ctggagtttaggctacatgt 285  Q
     ||| || ||||||||||||    
T  1501387 atggggtctaggctacatgt 1501406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 38280190 - 38280290
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||||||||    
T  38280190 ggaaaatgattggtagaccactcatatttccataccactcatacacccccacatattctagaggagagagatggatgaaagagaagagagacaaagtgtt 38280289  T
Q  265 t 265  Q
    |    
T  38280290 t 38280290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 42250298 - 42250198
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    |||||||||||||||||||||||||| ||||||| || || | |||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  42250298 ggaaaatgattggtagaccactcataatttcatatcacccgtgcacccccacatatttgagaggagagagatggatgaaaaggaagagagacaaagtgtt 42250199  T
Q  265 t 265  Q
    |    
T  42250198 t 42250198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 7886530 - 7886443
Alignment:
Q  171 tgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaa 259  Q
    |||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| ||| ||||||  |||||||||||||||||||||    
T  7886530 tgattggtagaccactaatattttcataccacccataca-ccctacatatttgaggggagagagatatatgaaagggaagagagacaaa 7886443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 38951570 - 38951522
Alignment:
Q  167 aaaatgattggtagaccactcatattttcataccatccatacaccccta 215  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  38951570 aaaatgattgatagaccactcatattttcataccacccatacaccccta 38951522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 165 - 285
Target Start/End: Original strand, 52055065 - 52055185
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  52055065 ggaaaatgattggtagaccactcataatttcataacatccatacaccctcacatatttgagaggagagagatggatgaaaaggaagagagacaaagtgtt 52055164  T
Q  265 tctggagtttaggctacatgt 285  Q
    | ||| || ||||| ||||||    
T  52055165 tgtggggtctaggccacatgt 52055185  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 49866821 - 49866732
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||           | |||||||| |||||| |||||||| ||||||||||||||||||    
T  49866821 ggaaaatgattggtagaccactcatattttcataccatccatac-----------tatgagaggagagagatcgatgaaagagaagagagacaaagtgtt 49866733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 1158222 - 1158272
Alignment:
Q  215 acatatttgagaggaaagagatggatgaaagggaagagagacaaagtgttt 265  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  1158222 acatatttgagaggagagagatgaatgaaagggaagagagacaaaatgttt 1158272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 165 - 285
Target Start/End: Complemental strand, 2286640 - 2286520
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||  | ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  2286640 ggaaaatgattggtagaccactcataatttcataccacccatacaccctcatatatttgagaggagagagatggatgaaaaggaagagagacaaagtgtt 2286541  T
Q  265 tctggagtttaggctacatgt 285  Q
    | ||| || ||||| ||||||    
T  2286540 tgtggggtctaggccacatgt 2286520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 40855070 - 40855168
Alignment:
Q  167 aaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgttt 265  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  40855070 aaaatgattgttagaccacttatattttcataccacccatacacccccacatatttgagaggagagagatgaatgaaagggaaaagagacaaagtgttt 40855168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 11765890 - 11765789
Alignment:
Q  164 gggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgt 263  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| |||||||||||||||||    
T  11765890 gggaaaatgattggtagaccactcatatttccataccactcatacacccccacatattctagaggagagagatggatgaaagagaagagagacaaagtgt 11765791  T
Q  264 tt 265  Q
    ||    
T  11765790 tt 11765789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 496865 - 496765
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||||||||    
T  496865 ggaaaatgattggtagaccactcatatttccataccactcatacacccccacatattctagaggagagagatggatgaaagagaagagagacaaagtgtt 496766  T
Q  265 t 265  Q
    |    
T  496765 t 496765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 23844817 - 23844717
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    |||||||||||| || ||||||||||||||||||||| | ||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  23844817 ggaaaatgattgataaaccactcatattttcataccacctatacacccccatatatttgagaggagagagatggatgaaaaggaagagagacaaagtgtt 23844718  T
Q  265 t 265  Q
    |    
T  23844717 t 23844717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 165 - 285
Target Start/End: Original strand, 7527181 - 7527301
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    |||||||||||||||||||||||||| |||| ||||| ||||||| ||| | ||||||||||||| ||||||||||||||   || ||||||||||||||    
T  7527181 ggaaaatgattggtagaccactcataatttcgtaccacccatacagccccatatatttgagaggagagagatggatgaaaaaaaaaagagacaaagtgtt 7527280  T
Q  265 tctggagtttaggctacatgt 285  Q
    | |||||| ||||| ||||||    
T  7527281 tatggagtctaggccacatgt 7527301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 42535132 - 42535231
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||||||||    
T  42535132 ggaaaatgattggtagaccactcatatttccataccactcatacacccc-acatattctagaggagagagatggatgaaagagaagagagacaaagtgtt 42535230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 48057655 - 48057716
Alignment:
Q  204 catacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgttt 265  Q
    |||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  48057655 catacacccccacatattttagaggagagagatggatgaaagagaagagagacaaagtgttt 48057716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 285
Target Start/End: Original strand, 25185878 - 25185970
Alignment:
Q  193 ttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctggagtttaggctacatgt 285  Q
    |||||||||| |||| ||||| ||||||||| ||||| |||||||||||||| |||||||||| ||||| ||| ||| || ||||| ||||||    
T  25185878 ttcataccattcatatacccccacatatttgtgaggagagagatggatgaaaaggaagagagataaagtatttgtggggtctaggccacatgt 25185970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 31427170 - 31427215
Alignment:
Q  167 aaaatgattggtagaccactcatattttcataccatccatacaccc 212  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||    
T  31427170 aaaatgattggtagaccactcatattttcataccacccaaacaccc 31427215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 4649281 - 4649329
Alignment:
Q  217 atatttgagaggaaagagatggatgaaagggaagagagacaaagtgttt 265  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||||||    
T  4649281 atatttgagaggagagagatggatgaaaaggaagagagataaagtgttt 4649329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 31427243 - 31427284
Alignment:
Q  231 agagatggatgaaagggaagagagacaaagtgtttctggagt 272  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  31427243 agagatggatgagagggaagagagacaaagtgtttgtggagt 31427284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 165 - 285
Target Start/End: Original strand, 33594436 - 33594556
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||| ||    
T  33594436 ggaaaatgattggtagaccactcataatttcataccacccatacacccccatatatttgagaggagagagatggatgaaaaggaagagagacaaagtatt 33594535  T
Q  265 tctggagtttaggctacatgt 285  Q
    | ||| || ||||| ||||||    
T  33594536 tgtggggtctaggccacatgt 33594556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 163 - 265
Target Start/End: Complemental strand, 11829141 - 11829039
Alignment:
Q  163 tgggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtg 262  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| | |||||| |||||||    
T  11829141 tgggaaaatgattggtagaccacttatattttcataccacccatacacccccacatatttgagaggagagagatggatgaaagaggagagaggcaaagtg 11829042  T
Q  263 ttt 265  Q
    |||    
T  11829041 ttt 11829039  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 13922367 - 13922267
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||||||||    
T  13922367 ggaaaatgattggtagaccactcatatttccataccactcatacacccccacatattctagaggagagagatggatgaaagagaagagagacaaagtgtt 13922268  T
Q  265 t 265  Q
    |    
T  13922267 t 13922267  T

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Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 47940998 - 47940888
Alignment:
Q  175 tggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctggagttt 274  Q
    |||||||||||||||| |||||||||| ||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||||||| ||| || |    
T  47940998 tggtagaccactcataatttcataccacccatacacccccatatatttgagaggagagagatggatgaaaaggaagagagacaaagtgtttgtggggtct 47940899  T
Q  275 aggctacatgt 285  Q
    |||| ||||||    
T  47940898 aggccacatgt 47940888  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 49786573 - 49786475
Alignment:
Q  167 aaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgttt 265  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| |||||||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  49786573 aaaatgattggtagaccactcatattttcataccactcatacacccccacatattttagaggagagagatgaatgaaagagaagagagacaaagtgttt 49786475  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 8436813 - 8436913
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| ||||||||||||||||||    
T  8436813 ggaaaatgattggtagaccactcatatttccataccactcatacacccccacatattctagaggagagagatggatgaaagagaagagagacaaagtgtt 8436912  T
Q  265 t 265  Q
    |    
T  8436913 t 8436913  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 8153128 - 8153041
Alignment:
Q  198 accatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtttctggagtttaggctacatgt 285  Q
    |||| ||||||||| | ||||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||| ||||| ||||||    
T  8153128 accacccatacacctccacatatttgagaggagagagatggataaaagagaagagagacaaagtgtttgtggagtctaggccacatgt 8153041  T

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Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 20186760 - 20186858
Alignment:
Q  167 aaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgttt 265  Q
    ||||||||||||||||||||||||||| |||||||  |||||||||| |||||||| |||||  ||||||||||||||| |||||||||||||||||||    
T  20186760 aaaatgattggtagaccactcatatttccataccactcatacacccccacatattttagaggggagagatggatgaaagagaagagagacaaagtgttt 20186858  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 30339818 - 30339718
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgtt 264  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||||  |||||||  |||||| ||||||||||||||| ||||||||||||||||||    
T  30339818 ggaaaatgattggtagaccactcatatttttataccactcatacaccctcacatattctagaggagagagatggatgaaagagaagagagacaaagtgtt 30339719  T
Q  265 t 265  Q
    |    
T  30339718 t 30339718  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 51787454 - 51787354
Alignment:
Q  164 gggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagacaaagtgt 263  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||| ||||||| |||||||||||||||||    
T  51787454 gggaaaatgattggtagaccactcatatttccataccactcatacacccc-acatattctagaggagagagatgcatgaaagagaagagagacaaagtgt 51787356  T
Q  264 tt 265  Q
    ||    
T  51787355 tt 51787354  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 9672889 - 9672981
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccatacacccctacatatttgagaggaaagagatggatgaaagggaagagagaca 257  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||| |||||||  |||||| ||||||||||||||| |||||||||||    
T  9672889 ggaaaatgattggtagaccactcatatttccataccactcatacacccccacatattctagaggagagagatggatgaaagagaagagagaca 9672981  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 43740309 - 43740352
Alignment:
Q  165 ggaaaatgattggtagaccactcatattttcataccatccataca 209  Q
    |||||||||||||||||| ||| |||||||||||||| |||||||    
T  43740309 ggaaaatgattggtagactact-atattttcataccacccataca 43740352  T

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