View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16606_low_5 (Length: 250)
Name: NF16606_low_5
Description: NF16606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16606_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39521366 - 39521128
Alignment:
| Q |
1 |
tatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatac |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||||| || | |||||||||||||||||||||||| |
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| T |
39521366 |
tatcgagagaatggttagcagatgacagttatgtaactaatccacaaaacgctaagaatcgctcctttgacgttcatattccacgcactgcaaatgatac |
39521267 |
T |
|
| Q |
101 |
atctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagcagcataagttggagggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
39521266 |
atctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagcaacataagttggagtgtt |
39521167 |
T |
|
| Q |
201 |
cctgtagagaagaacgtagatcatttacttaggtttcat |
239 |
Q |
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| T |
39521166 |
cctgtagagaagaacgtagatcatttacttaggtttcat |
39521128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39576008 - 39575770
Alignment:
| Q |
1 |
tatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatac |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||| |
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| T |
39576008 |
tatcgagagaatggttaccagatgacagatatgtaactaatctacaaaacgctaagaattgctcctttgacggtgatattccacgcactgcaaatgatac |
39575909 |
T |
|
| Q |
101 |
atctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagcagcataagttggagggtt |
200 |
Q |
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| T |
39575908 |
gtctgatggtccaaattcaaatcaatatattgctccagatattgtttataaaactggcaaagagagtattaacggttctagcagcataagttggagtgtt |
39575809 |
T |
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| Q |
201 |
cctgtagagaagaacgtagatcatttacttaggtttcat |
239 |
Q |
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| T |
39575808 |
cctgtagagaagaacgtagatcattttcttaggtttcat |
39575770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 39544162 - 39543997
Alignment:
| Q |
1 |
tatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||| | || ||| ||||||||||||| |||| |
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| T |
39544162 |
tatcgagagaatggttaccagatgacagttatataactaatccacaaaacgctaagaatggttcctttgcagatgaaattaaacgcactgcaaataatac |
39544063 |
T |
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| Q |
101 |
atctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagag |
166 |
Q |
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| T |
39544062 |
atatgaaggtccaaattcaaatatatatattgctccggacgctgtttatgaaactgccaaagagag |
39543997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 39524866 - 39524630
Alignment:
| Q |
1 |
tatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatac |
100 |
Q |
| |
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|||| ||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||| | ||||| |||| |||| |||||||||||||||| |
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| T |
39524866 |
tatcaagagaatggttaccagatgacagatatataactgatccccaaaacgctaagaatggttcctttgaaggtgatattaaacgcactgcaaatgatga |
39524767 |
T |
|
| Q |
101 |
atctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagc------agcataagttgg |
194 |
Q |
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| T |
39524766 |
atctgttgattcaaattcaaataaatacataggtccagatattgtttataaaactgccaaagtgagtgttaatggttcaatcggtttaaacataagttgg |
39524667 |
T |
|
| Q |
195 |
agggttcctgtagagaagaacgtagatcatttactta |
231 |
Q |
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| T |
39524666 |
agtgttcctgtggagaagaatatagatcatttcctta |
39524630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 39580543 - 39580415
Alignment:
| Q |
12 |
tggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatacatctgatggtc |
111 |
Q |
| |
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|||||||||||||||||||| | ||||||| ||| |||||||||||| |||||||| |||| |||| |||||||||| |||| ||||||||||| |
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| T |
39580543 |
tggttaccagatgacagttacatcactaatccacataacgctaagaatggtttctttggaggtgatattaaacgcactgcaggtgatgaatctgatggtc |
39580444 |
T |
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| Q |
112 |
caaattcaaatcaatatattgctccagac |
140 |
Q |
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| T |
39580443 |
caaattcaaatatacatattggtccagac |
39580415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 39511120 - 39510957
Alignment:
| Q |
1 |
tatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatac |
100 |
Q |
| |
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|||| ||||||||||||| ||||||||| || ||||||||| |||||| || |||| | | |||||| || |||| || | ||||||||||| |
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| T |
39511120 |
tatcaagagaatggttacgagatgacagatacataactaatccacaaaatgcgaagattggttcctttgg---tgatattaaacacgctgcaaatgatga |
39511024 |
T |
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| Q |
101 |
atctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagt |
167 |
Q |
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|||||||||||||||||||| | |||||||| |||||| | |||||| |||||||| |||||||| |
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| T |
39511023 |
atctgatggtccaaattcaagtatatatattggtccagatattgtttataaaactggccaagagagt |
39510957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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