View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16606_low_6 (Length: 242)
Name: NF16606_low_6
Description: NF16606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16606_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 10559386 - 10559152
Alignment:
| Q |
3 |
gaccatctgctcctcatttgcttaacaaatataaagaaaaatacaaatgtattttgttcaaattataagcaaaagtcataatatattttgtccaaattat |
102 |
Q |
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| T |
10559386 |
gaccatctgctcctcatttgcttaacaaatataaaaaaaaatacaaatgtattttgttcaaattataagcaaaagtcataatatattttgtccaaattat |
10559287 |
T |
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| Q |
103 |
aagaaaa-ttcaaaatgtatttgatccaaatttaattatgatcaaatacattttagttttgcttaaatttaagattggagagagtttgtacccaaaaaat |
201 |
Q |
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| T |
10559286 |
aagaaaaattcaaaatgtatttgatccagatttaattttgatcaaatacattttacttttgcttaaatttaagattggagagagtttgtaccaaaaaaaa |
10559187 |
T |
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| Q |
202 |
aaattggagagaatattttaccatctttatccatt |
236 |
Q |
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|||||||||| | |||||||||||||||||||||| |
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| T |
10559186 |
aaattggagaaagtattttaccatctttatccatt |
10559152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 45776095 - 45776127
Alignment:
| Q |
103 |
aagaaaattcaaaatgtatttgatccaaattta |
135 |
Q |
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| T |
45776095 |
aagaaaagtcaaaatgtatttgatccaaattta |
45776127 |
T |
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