View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16606_low_7 (Length: 233)
Name: NF16606_low_7
Description: NF16606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16606_low_7 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 39576305 - 39576080
Alignment:
| Q |
8 |
ctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgc |
107 |
Q |
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| T |
39576305 |
ctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgc |
39576206 |
T |
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| Q |
108 |
gtttgttaacgcaatagaactctttatgcttccggttcatttaatccctgattcaatgacacgtttctcttacgaagaatctggtgttcgaggaggctta |
207 |
Q |
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| T |
39576205 |
gtttgttaatgcaatagaactctttatgcttccggttcatttaatccctgattcaatgccacatttctcttacaaagaatctggtgttcgaggaggctta |
39576106 |
T |
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| Q |
208 |
tctacttatattggcggtttacactc |
233 |
Q |
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|||||||||||||||||||||||||| |
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| T |
39576105 |
tctacttatattggcggtttacactc |
39576080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 39521660 - 39521506
Alignment:
| Q |
8 |
ctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgc |
107 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
39521660 |
ctgaaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcatcatttgc |
39521561 |
T |
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| Q |
108 |
gtttgttaacgcaatagaactctttatgcttccggttcatttaatccctgattca |
162 |
Q |
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| T |
39521560 |
gtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattca |
39521506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 39511414 - 39511192
Alignment:
| Q |
8 |
ctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgc |
107 |
Q |
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|||||||||||||||| ||| ||||||||||||| || |||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||||| | || |
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| T |
39511414 |
ctgaaaacaccaccaactctcctttagtaaaagaatactacgttcaaatcatcagaaaaagattcaaaatcactttcacacctcaaaaatcatcactcgc |
39511315 |
T |
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| Q |
108 |
gtttgttaacgcaatagaactctttatgcttccggttcatttaatccctgattcaatgacacgtttctcttacgaagaatctggtgttcgaggaggctta |
207 |
Q |
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| T |
39511314 |
atttgttaacgcaatagaactctttgtgctccccgttcatttaatccctgattcagtgttgcgttttacttacaaagaatctagttctc---caggctta |
39511218 |
T |
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| Q |
208 |
tctacttatattggcggtttacactc |
233 |
Q |
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|||| ||||| |||||||||| |||| |
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| T |
39511217 |
tctaattatagtggcggtttaaactc |
39511192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 39525154 - 39525001
Alignment:
| Q |
11 |
aaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgcgtt |
110 |
Q |
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||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||| | |||||||||| || |
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| T |
39525154 |
aaaacaccaccaactctcctttagtaaaagagtattaccttaaaatcatcagaaaaaaattcaaaatcacgttcacacctcaaaaagcatcatttgcctt |
39525055 |
T |
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| Q |
111 |
tgttaacgcaatagaactctttatgcttccggttcatttaatccctgattcaat |
164 |
Q |
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| T |
39525054 |
tgctaatgcaatagaactctttatgctccctgttcatttaatccccgactcaat |
39525001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 39544453 - 39544309
Alignment:
| Q |
8 |
ctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgc |
107 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||| |
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| T |
39544453 |
ctgaaaacaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcttcatttgc |
39544354 |
T |
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| Q |
108 |
gtttgttaacgcaatagaactctttatgcttccggttcatttaat |
152 |
Q |
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|||| |||| ||| | ||||||||||| || || |||||||||| |
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| T |
39544353 |
gttttttaatgcatttgaactctttattctccctcttcatttaat |
39544309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 39580789 - 39580719
Alignment:
| Q |
64 |
aaaagattcaaaatcatattcacacctcaaacatcatcatttgcgtttgttaacgcaatagaactctttat |
134 |
Q |
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| T |
39580789 |
aaaagattcaaaatcactttcacacctcaaacctcatcatttgcgtttgttaatgcaatggaactctttat |
39580719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 3331629 - 3331696
Alignment:
| Q |
11 |
aaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatc |
78 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||||| |||| |
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| T |
3331629 |
aaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcataaaaagattcacaatc |
3331696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 3331275 - 3331316
Alignment:
| Q |
82 |
ttcacacctcaaacatcatcatttgcgtttgttaacgcaata |
123 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||| |
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| T |
3331275 |
ttcacacctcaaacatcatcatttgcatttgttaatgcaata |
3331316 |
T |
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