View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16607_high_16 (Length: 298)

Name: NF16607_high_16
Description: NF16607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16607_high_16
NF16607_high_16
[»] chr5 (9 HSPs)
chr5 (76-273)||(41889925-41890122)
chr5 (1-77)||(16544728-16544804)
chr5 (1-77)||(16546950-16547026)
chr5 (1-77)||(40382619-40382694)
chr5 (76-215)||(41903385-41903524)
chr5 (1-77)||(40380408-40380483)
chr5 (1-77)||(10593575-10593650)
chr5 (1-77)||(25078438-25078513)
chr5 (1-77)||(25136407-25136482)
[»] chr8 (4 HSPs)
chr8 (1-77)||(15290841-15290917)
chr8 (1-77)||(15471210-15471286)
chr8 (1-78)||(42575099-42575176)
chr8 (120-215)||(27921353-27921448)
[»] chr6 (8 HSPs)
chr6 (1-77)||(33341878-33341954)
chr6 (1-77)||(13154232-13154308)
chr6 (1-77)||(13159088-13159164)
chr6 (1-77)||(34165175-34165251)
chr6 (1-77)||(6027563-6027638)
chr6 (7-78)||(6136078-6136148)
chr6 (1-77)||(25421623-25421698)
chr6 (1-77)||(34167397-34167472)
[»] chr4 (6 HSPs)
chr4 (1-77)||(5136383-5136459)
chr4 (1-77)||(5138608-5138684)
chr4 (1-77)||(8395921-8395996)
chr4 (1-77)||(8393712-8393787)
chr4 (1-77)||(7123000-7123075)
chr4 (1-78)||(7125219-7125295)
[»] chr3 (12 HSPs)
chr3 (1-78)||(10211712-10211789)
chr3 (8-77)||(10209499-10209568)
chr3 (1-77)||(10056536-10056612)
chr3 (1-77)||(10058758-10058834)
chr3 (1-77)||(10060980-10061056)
chr3 (1-77)||(10063202-10063278)
chr3 (1-77)||(10065424-10065500)
chr3 (1-77)||(10067623-10067699)
chr3 (1-77)||(25637747-25637822)
chr3 (1-77)||(4598299-4598374)
chr3 (1-77)||(4600520-4600595)
chr3 (1-79)||(3617767-3617844)
[»] chr7 (6 HSPs)
chr7 (1-77)||(18388536-18388611)
chr7 (6-77)||(18391972-18392042)
chr7 (1-77)||(6592116-6592191)
chr7 (1-77)||(6594334-6594409)
chr7 (1-77)||(32060098-32060173)
chr7 (1-77)||(1560441-1560516)
[»] chr2 (2 HSPs)
chr2 (1-77)||(13655805-13655880)
chr2 (1-77)||(12647162-12647237)
[»] scaffold0565 (1 HSPs)
scaffold0565 (1-77)||(2380-2455)
[»] scaffold0137 (1 HSPs)
scaffold0137 (1-77)||(6592-6667)
[»] chr1 (1 HSPs)
chr1 (1-77)||(44203949-44204024)
[»] scaffold1808 (1 HSPs)
scaffold1808 (1-33)||(182-214)
[»] scaffold0674 (1 HSPs)
scaffold0674 (1-33)||(3545-3577)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 76 - 273
Target Start/End: Complemental strand, 41890122 - 41889925
Alignment:
Q  76 cacatatattatccattattaaaagatgtgatttctctgctgctaagttatctcaaattcactcagcatgtgaacttacaccattagatttcattcaact 175  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41890122 cacatatattatccttgattaaaagatgtgatttctctgctgctaagttatctcaaattcactcagcatgtgaacttacaccattagatttcatacaact 41890023  T
Q  176 cattgatttcaatagaaagatgcaactaaaggactaatctcaagttgatgatggaacacttattaagagtacattttaaagctcaaactttagcagaa 273  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41890022 cattgatttcaagagaaagatgcaactaaaggactaatctcaagttgatgatggaacacttattaagagtacattttaaagctcaaactttagcagaa 41889925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16544728 - 16544804
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||  |||||||||||||||    
T  16544728 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccggtccttggaggctcggggattcacaaca 16544804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16546950 - 16547026
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||  |||||||||||||||    
T  16546950 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccggtccttggaggctcggggattcacaaca 16547026  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40382619 - 40382694
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||  |||||||||||||||    
T  40382619 tccgccgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggctcggggattcacaaca 40382694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 41903524 - 41903385
Alignment:
Q  76 cacatatattatccattattaaaagatgtgatttctctgctgctaagttatctcaaattcactcagcatgtgaacttacaccattagatttcattcaact 175  Q
    |||||||||||||| | || ||||||| ||||||||||||||||| |||| | || |||||| ||||||||||||||| ||||||||| ||||  ||| |    
T  41903524 cacatatattatccttaatcaaaagatatgatttctctgctgctacgttaacgcacattcacgcagcatgtgaacttaaaccattagacttcacacaaat 41903425  T
Q  176 cattgatttcaatagaaagatgcaactaaaggactaatct 215  Q
    |  ||||||||| |||||| || ||| | |||| ||||||    
T  41903424 ctatgatttcaagagaaaggtgtaaccagaggattaatct 41903385  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40380408 - 40380483
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||  |||||||||||||||    
T  40380408 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggctcggggattcacaaca 40380483  T

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Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10593575 - 10593650
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||| | ||||||| |||||||    
T  10593575 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gatcttggagatacggggatacacaaca 10593650  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25078438 - 25078513
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||| || |||||||||  ||||||||||||||    
T  25078438 tccgtcgctccacacatcattcttctttgtattggtgtggttcgatcc-ggccttggaggtttggggattcacaaca 25078513  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25136407 - 25136482
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||| || |||||||||  ||||||||||||||    
T  25136407 tccgtcgctccacacatcattcttctttgtattggtgtggttcgatcc-ggccttggaggtttggggattcacaaca 25136482  T

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Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15290841 - 15290917
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15290841 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 15290917  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15471210 - 15471286
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15471210 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 15471286  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 42575176 - 42575099
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaacac 78  Q
    |||| ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  42575176 tccgtcgctccacacatcattatagtttgtattggtgtggttcgatccgggtcttggaggctcggggattcacaacac 42575099  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 27921353 - 27921448
Alignment:
Q  120 aagttatctcaaattcactcagcatgtgaacttacaccattagatttcattcaactcattgatttcaatagaaagatgcaactaaaggactaatct 215  Q
    |||||||| || |||||| ||| |||||||||||||| |||||||||||  ||| ||| ||||||||| |||||| || ||||||| || ||||||    
T  27921353 aagttatcgcacattcacacagtatgtgaacttacacgattagatttcacacaaatcactgatttcaagagaaagttgtaactaaatgattaatct 27921448  T

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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33341954 - 33341878
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33341954 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 33341878  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13154232 - 13154308
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  13154232 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccgaggattcacaaca 13154308  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13159088 - 13159164
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  13159088 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccgaggattcacaaca 13159164  T

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Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34165175 - 34165251
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||||||||    
T  34165175 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 34165251  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6027563 - 6027638
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||    
T  6027563 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-agtcttggagatccggggattcacaaca 6027638  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 6136148 - 6136078
Alignment:
Q  7 gctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaacac 78  Q
    |||||||||||||||||||||||||||||  ||||||||||| || ||||||||||||||||||||||||||    
T  6136148 gctccacacatcattattctttgtattggtatggttcgatcc-ggccttggaggtccggggattcacaacac 6136078  T

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Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25421623 - 25421698
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||  |||||||||||||||    
T  25421623 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggctcggggattcacaaca 25421698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34167397 - 34167472
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |  ||||||||  |||||||||||||||    
T  34167397 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggctcggggattcacaaca 34167472  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5136383 - 5136459
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5136383 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 5136459  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5138608 - 5138684
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5138608 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 5138684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8395921 - 8395996
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  8395921 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggtcttggaggtccggggattcacaaca 8395996  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8393712 - 8393787
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||    
T  8393712 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggtctttgaggtccggggattcacaaca 8393787  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 7123000 - 7123075
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||| |||||||||||||||    
T  7123000 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaaca 7123075  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 7125219 - 7125295
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaacac 78  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||| || ||||||||| ||||||||||||||||    
T  7125219 tccgtcgctccacacatcattattctttatattggtgtggttcgatcc-ggccttggaggttcggggattcacaacac 7125295  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 10211712 - 10211789
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaacac 78  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10211712 tccgtcgctccacacatcattattctctgtattggtgtggttcgatccgggtcttggaggtccggggattcacaacac 10211789  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 10209499 - 10209568
Alignment:
Q  8 ctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10209499 ctccacacatcattattctctgtattggtgtggttcgatccgggtcttggaggtccggggattcacaaca 10209568  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10056536 - 10056612
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||||||||    
T  10056536 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 10056612  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10058758 - 10058834
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||||||||    
T  10058758 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 10058834  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10060980 - 10061056
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||||||||    
T  10060980 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 10061056  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10063202 - 10063278
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||||||||    
T  10063202 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 10063278  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10065424 - 10065500
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||||||||    
T  10065424 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 10065500  T

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Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10067623 - 10067699
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||||||||    
T  10067623 tccgtcgctccacacatcattattctttgtattggtgtggttcgatccggaccttggaggttcggggattcacaaca 10067699  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25637747 - 25637822
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||||||||||||    
T  25637747 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggtccggggattcacaaca 25637822  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4598374 - 4598299
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |  ||||||||| |||||||||||||||    
T  4598374 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggttcggggattcacaaca 4598299  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4600595 - 4600520
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |  ||||||||| |||||||||||||||    
T  4600595 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggttcggggattcacaaca 4600520  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 3617767 - 3617844
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaacaca 79  Q
    |||| |||||||||||||||| || |||||||||| |||||||||||| |  ||||||||  |||||||||||||||||    
T  3617767 tccgtcgctccacacatcattcttatttgtattggtgtggttcgatcc-gaccttggaggctcggggattcacaacaca 3617844  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18388611 - 18388536
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||| |||||||||||||||    
T  18388611 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaaca 18388536  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 18392042 - 18391972
Alignment:
Q  6 cgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||||||||||||||||||||||||||||| |||||||||||| || ||||||||| |||||||||||||||    
T  18392042 cgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggttcggggattcacaaca 18391972  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 6592191 - 6592116
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||  |||||||||||||||    
T  6592191 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggctcggggattcacaaca 6592116  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 6594409 - 6594334
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||  |||||||||||||||    
T  6594409 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggctcggggattcacaaca 6594334  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 32060173 - 32060098
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||| || ||||||||| |||||||||||||||    
T  32060173 tccgtcgctccacacatcattattctttatattggtgtggttcgatcc-ggccttggaggttcggggattcacaaca 32060098  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 1560516 - 1560441
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |  ||||||||  |||||||||||||||    
T  1560516 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggctcggggattcacaaca 1560441  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13655880 - 13655805
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||||||||||||    
T  13655880 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggtccggggattcacaaca 13655805  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12647237 - 12647162
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||  |||||||||||||||    
T  12647237 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-ggccttggaggctcggggattcacaaca 12647162  T

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Target: scaffold0565 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2455 - 2380
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |  ||||||||  |||||||||||||||    
T  2455 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggctcggggattcacaaca 2380  T

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Target: scaffold0137 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6592 - 6667
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||||||   |||||||||||||||    
T  6592 tccgtcgctccacatatcattattctttgtattggtgtggttcgatcc-ggtcttggagactcggggattcacaaca 6667  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44203949 - 44204024
Alignment:
Q  1 tccgccgctccacacatcattattctttgtattggcgtggttcgatccgggtcttggaggtccggggattcacaaca 77  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |  ||||||||  |||||||||||||||    
T  44203949 tccgtcgctccacacatcattattctttgtattggtgtggttcgatcc-gaccttggaggctcggggattcacaaca 44204024  T

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Target: scaffold1808 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 182 - 214
Alignment:
Q  1 tccgccgctccacacatcattattctttgtatt 33  Q
    |||| ||||||||||||||||||||||||||||    
T  182 tccgtcgctccacacatcattattctttgtatt 214  T

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Target: scaffold0674 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3577 - 3545
Alignment:
Q  1 tccgccgctccacacatcattattctttgtatt 33  Q
    |||| ||||||||||||||||||||||||||||    
T  3577 tccgtcgctccacacatcattattctttgtatt 3545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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